Bacteroides thetaiotaomicron VPI-5482: 4778 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Bacteroides thetaiotaomicron VPI-5482 genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 50.0 | 36.0 | 44.8 | 43.6 |
st. dev. | 5.4 | 4.3 | 9.7 | 4.9 |
skewness | -0.4 | 0.1 | -0.1 | -0.4 |
kurtosis | 3.4 | 4.6 | 3.2 | 3.5 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 6.8 | 2.3 | M | 2.8 | 1.1 |
C | 1.4 | 1.0 | N | 5.0 | 1.7 |
D | 5.4 | 1.7 | P | 3.7 | 1.3 |
E | 6.7 | 2.3 | Q | 3.4 | 1.4 |
F | 4.6 | 1.8 | R | 4.6 | 1.9 |
G | 6.5 | 2.2 | S | 6.2 | 1.9 |
H | 1.9 | 1.1 | T | 5.6 | 1.6 |
I | 7.1 | 2.2 | V | 6.4 | 1.9 |
K | 6.8 | 2.0 | W | 1.3 | 0.9 |
L | 9.2 | 2.4 | Y | 4.5 | 1.6 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 20.4 | 13.2 | CAT (H) | 12.5 | 8.6 | CCT (P) | 11.4 | 7.0 | AGT (S) | 11.8 | 7.6 |
GCC (A) | 18.3 | 11.4 | CAC (H) | 6.3 | 6.0 | CCC (P) | 7.3 | 6.1 | AGC (S) | 10.0 | 7.0 |
GCG (A) | 9.8 | 7.5 | ATT (I) | 27.1 | 13.4 | CCG (P) | 13.9 | 8.6 | ACT (T) | 15.1 | 9.1 |
GCA (A) | 19.6 | 9.9 | ATC (I) | 26.5 | 15.0 | CCA (P) | 4.2 | 4.7 | ACC (T) | 13.9 | 8.9 |
TGT (C) | 7.4 | 6.6 | ATA (I) | 17.5 | 12.1 | CAG (Q) | 19.3 | 10.4 | ACG (T) | 10.7 | 7.5 |
TGC (C) | 6.0 | 6.0 | AAG (K) | 25.9 | 12.3 | CAA (Q) | 15.0 | 9.5 | ACA (T) | 15.7 | 8.8 |
GAT (D) | 32.2 | 14.9 | AAA (K) | 42.3 | 15.8 | CGT (R) | 16.3 | 10.3 | GTT (V) | 13.9 | 9.4 |
GAC (D) | 21.6 | 12.3 | TTG (L) | 21.1 | 12.3 | CGC (R) | 8.9 | 7.3 | GTC (V) | 10.7 | 7.3 |
GAG (E) | 18.9 | 11.1 | TTA (L) | 13.5 | 11.1 | CGG (R) | 6.6 | 7.0 | GTG (V) | 16.8 | 10.8 |
GAA (E) | 47.6 | 18.9 | CTT (L) | 15.3 | 8.8 | CGA (R) | 3.5 | 4.2 | GTA (V) | 22.0 | 10.7 |
TTT (F) | 23.6 | 13.9 | CTC (L) | 8.8 | 7.5 | AGG (R) | 3.2 | 4.9 | TGG (W) | 12.9 | 9.3 |
TTC (F) | 22.6 | 12.4 | CTG (L) | 28.3 | 16.1 | AGA (R) | 7.5 | 7.2 | TAT (Y) | 31.5 | 14.3 |
GGT (G) | 19.5 | 13.2 | CTA (L) | 4.9 | 5.4 | TCT (S) | 13.1 | 8.9 | TAC (Y) | 13.4 | 8.7 |
GGC (G) | 12.9 | 8.6 | ATG (M) | 28.1 | 11.2 | TCC (S) | 10.5 | 7.5 | TGA (.) | 0.7 | 1.7 |
GGG (G) | 7.0 | 6.0 | AAT (N) | 30.2 | 14.5 | TCG (S) | 7.6 | 6.0 | TAG (.) | 0.5 | 1.5 |
GGA (G) | 25.8 | 12.0 | AAC (N) | 19.4 | 11.5 | TCA (S) | 8.5 | 6.7 | TAA (.) | 2.2 | 2.3 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 1.18 | 0.64 | CAT (H) | 1.26 | 0.59 | CCT (P) | 1.25 | 0.79 | AGT (S) | 1.14 | 0.72 |
GCC (A) | 1.06 | 0.63 | CAC (H) | 0.64 | 0.54 | CCC (P) | 0.77 | 0.67 | AGC (S) | 1.00 | 0.75 |
GCG (A) | 0.58 | 0.46 | ATT (I) | 1.14 | 0.46 | CCG (P) | 1.45 | 0.85 | ACT (T) | 1.09 | 0.64 |
GCA (A) | 1.18 | 0.58 | ATC (I) | 1.12 | 0.57 | CCA (P) | 0.48 | 0.60 | ACC (T) | 0.98 | 0.62 |
TGT (C) | 1.03 | 0.66 | ATA (I) | 0.73 | 0.44 | CAG (Q) | 1.10 | 0.49 | ACG (T) | 0.78 | 0.55 |
TGC (C) | 0.83 | 0.64 | AAG (K) | 0.76 | 0.30 | CAA (Q) | 0.87 | 0.48 | ACA (T) | 1.14 | 0.61 |
GAT (D) | 1.19 | 0.43 | AAA (K) | 1.24 | 0.30 | CGT (R) | 2.11 | 1.23 | GTT (V) | 0.90 | 0.59 |
GAC (D) | 0.79 | 0.42 | TTG (L) | 1.38 | 0.76 | CGC (R) | 1.13 | 0.92 | GTC (V) | 0.69 | 0.51 |
GAG (E) | 0.57 | 0.31 | TTA (L) | 0.91 | 0.72 | CGG (R) | 0.80 | 0.77 | GTG (V) | 1.02 | 0.60 |
GAA (E) | 1.42 | 0.32 | CTT (L) | 1.02 | 0.58 | CGA (R) | 0.46 | 0.58 | GTA (V) | 1.39 | 0.63 |
TTT (F) | 1.02 | 0.44 | CTC (L) | 0.57 | 0.49 | AGG (R) | 0.40 | 0.60 | TGG (W) | - | - |
TTC (F) | 0.97 | 0.44 | CTG (L) | 1.79 | 0.95 | AGA (R) | 1.08 | 1.05 | TAT (Y) | 1.38 | 0.40 |
GGT (G) | 1.16 | 0.68 | CTA (L) | 0.33 | 0.37 | TCT (S) | 1.25 | 0.82 | TAC (Y) | 0.61 | 0.39 |
GGC (G) | 0.78 | 0.53 | ATG (M) | - | - | TCC (S) | 1.01 | 0.71 | TGA (.) | - | - |
GGG (G) | 0.46 | 0.44 | AAT (N) | 1.21 | 0.42 | TCG (S) | 0.75 | 0.61 | TAG (.) | - | - |
GGA (G) | 1.58 | 0.66 | AAC (N) | 0.78 | 0.42 | TCA (S) | 0.84 | 0.66 | TAA (.) | - | - |