Synechocystis PCC6803: 3167 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Synechocystis PCC6803 genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 55.7 | 39.7 | 49.6 | 48.3 |
st. dev. | 5.5 | 4.7 | 8.2 | 4.9 |
skewness | -0.9 | -0.2 | -1.2 | -1.4 |
kurtosis | 4.1 | 4.0 | 4.3 | 4.9 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 8.4 | 2.6 | M | 2.1 | 1.1 |
C | 1.1 | 0.9 | N | 3.9 | 1.6 |
D | 4.9 | 1.7 | P | 5.1 | 1.9 |
E | 6.1 | 2.3 | Q | 5.5 | 2.2 |
F | 4.0 | 1.7 | R | 5.2 | 2.0 |
G | 7.2 | 2.3 | S | 5.8 | 1.8 |
H | 1.9 | 1.2 | T | 5.3 | 1.6 |
I | 6.3 | 2.0 | V | 6.7 | 2.0 |
K | 4.4 | 2.2 | W | 1.6 | 1.2 |
L | 11.5 | 3.0 | Y | 3.0 | 1.4 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 20.1 | 10.9 | CAT (H) | 11.8 | 8.8 | CCT (P) | 9.8 | 7.0 | AGT (S) | 14.8 | 8.3 |
GCC (A) | 38.1 | 17.3 | CAC (H) | 7.3 | 6.7 | CCC (P) | 25.0 | 12.7 | AGC (S) | 10.3 | 6.9 |
GCG (A) | 15.0 | 10.0 | ATT (I) | 39.5 | 15.6 | CCG (P) | 8.3 | 6.4 | ACT (T) | 13.5 | 8.3 |
GCA (A) | 10.7 | 7.7 | ATC (I) | 17.9 | 9.5 | CCA (P) | 8.1 | 6.7 | ACC (T) | 25.6 | 12.4 |
TGT (C) | 6.8 | 6.5 | ATA (I) | 5.0 | 8.8 | CAG (Q) | 21.0 | 11.5 | ACG (T) | 7.6 | 6.0 |
TGC (C) | 4.1 | 4.7 | AAG (K) | 13.0 | 9.0 | CAA (Q) | 33.6 | 15.9 | ACA (T) | 6.6 | 6.3 |
GAT (D) | 31.3 | 13.2 | AAA (K) | 30.8 | 17.5 | CGT (R) | 10.6 | 7.8 | GTT (V) | 16.6 | 9.4 |
GAC (D) | 17.8 | 9.8 | TTG (L) | 29.6 | 13.7 | CGC (R) | 12.4 | 8.3 | GTC (V) | 11.2 | 7.4 |
GAG (E) | 15.9 | 10.2 | TTA (L) | 25.9 | 13.9 | CGG (R) | 13.3 | 9.0 | GTG (V) | 28.7 | 15.1 |
GAA (E) | 44.6 | 18.0 | CTT (L) | 10.4 | 7.9 | CGA (R) | 5.4 | 5.6 | GTA (V) | 10.5 | 7.4 |
TTT (F) | 29.6 | 14.1 | CTC (L) | 14.0 | 8.8 | AGG (R) | 5.1 | 5.4 | TGG (W) | 16.0 | 11.8 |
TTC (F) | 10.4 | 8.1 | CTG (L) | 20.2 | 11.5 | AGA (R) | 5.0 | 7.4 | TAT (Y) | 17.2 | 10.1 |
GGT (G) | 19.4 | 11.4 | CTA (L) | 14.2 | 8.4 | TCT (S) | 8.7 | 7.2 | TAC (Y) | 12.2 | 8.0 |
GGC (G) | 22.1 | 11.4 | ATG (M) | 20.8 | 10.5 | TCC (S) | 15.7 | 8.8 | TGA (.) | 0.8 | 1.9 |
GGG (G) | 17.3 | 9.9 | AAT (N) | 24.3 | 12.5 | TCG (S) | 4.0 | 4.3 | TAG (.) | 1.5 | 2.3 |
GGA (G) | 12.9 | 8.6 | AAC (N) | 14.5 | 9.4 | TCA (S) | 4.1 | 5.6 | TAA (.) | 1.7 | 2.4 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 0.99 | 0.54 | CAT (H) | 1.13 | 0.64 | CCT (P) | 0.78 | 0.61 | AGT (S) | 1.54 | 0.85 |
GCC (A) | 1.77 | 0.63 | CAC (H) | 0.70 | 0.58 | CCC (P) | 1.93 | 0.83 | AGC (S) | 1.09 | 0.78 |
GCG (A) | 0.69 | 0.44 | ATT (I) | 1.88 | 0.50 | CCG (P) | 0.63 | 0.53 | ACT (T) | 1.02 | 0.62 |
GCA (A) | 0.55 | 0.48 | ATC (I) | 0.89 | 0.46 | CCA (P) | 0.64 | 0.59 | ACC (T) | 1.91 | 0.80 |
TGT (C) | 1.03 | 0.75 | ATA (I) | 0.23 | 0.36 | CAG (Q) | 0.76 | 0.36 | ACG (T) | 0.56 | 0.48 |
TGC (C) | 0.64 | 0.66 | AAG (K) | 0.60 | 0.36 | CAA (Q) | 1.23 | 0.36 | ACA (T) | 0.50 | 0.52 |
GAT (D) | 1.27 | 0.36 | AAA (K) | 1.39 | 0.38 | CGT (R) | 1.23 | 0.84 | GTT (V) | 1.03 | 0.62 |
GAC (D) | 0.72 | 0.36 | TTG (L) | 1.53 | 0.63 | CGC (R) | 1.43 | 0.93 | GTC (V) | 0.68 | 0.47 |
GAG (E) | 0.52 | 0.29 | TTA (L) | 1.36 | 0.72 | CGG (R) | 1.50 | 0.97 | GTG (V) | 1.65 | 0.74 |
GAA (E) | 1.47 | 0.30 | CTT (L) | 0.55 | 0.45 | CGA (R) | 0.63 | 0.65 | GTA (V) | 0.64 | 0.47 |
TTT (F) | 1.47 | 0.39 | CTC (L) | 0.76 | 0.52 | AGG (R) | 0.58 | 0.65 | TGG (W) | - | - |
TTC (F) | 0.52 | 0.37 | CTG (L) | 1.05 | 0.58 | AGA (R) | 0.58 | 0.82 | TAT (Y) | 1.14 | 0.49 |
GGT (G) | 1.08 | 0.60 | CTA (L) | 0.75 | 0.47 | TCT (S) | 0.88 | 0.73 | TAC (Y) | 0.82 | 0.48 |
GGC (G) | 1.22 | 0.60 | ATG (M) | - | - | TCC (S) | 1.66 | 0.94 | TGA (.) | - | - |
GGG (G) | 0.94 | 0.55 | AAT (N) | 1.24 | 0.44 | TCG (S) | 0.41 | 0.47 | TAG (.) | - | - |
GGA (G) | 0.75 | 0.57 | AAC (N) | 0.74 | 0.43 | TCA (S) | 0.41 | 0.56 | TAA (.) | - | - |