Pyrobaculum aerophilum: 2605 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Pyrobaculum aerophilum genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 55.4 | 40.4 | 59.5 | 51.7 |
st. dev. | 4.7 | 4.8 | 8.2 | 4.7 |
skewness | -0.2 | 0.0 | -0.4 | -0.3 |
kurtosis | 3.7 | 3.7 | 4.1 | 4.2 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 9.9 | 3.1 | M | 1.8 | 1.0 |
C | 0.9 | 1.1 | N | 2.5 | 1.3 |
D | 4.2 | 1.6 | P | 4.9 | 1.9 |
E | 7.1 | 2.9 | Q | 2.1 | 1.3 |
F | 3.6 | 1.6 | R | 6.6 | 2.2 |
G | 7.5 | 2.2 | S | 4.9 | 1.8 |
H | 1.5 | 1.0 | T | 4.3 | 1.8 |
I | 6.3 | 2.2 | V | 9.5 | 2.4 |
K | 5.8 | 2.3 | W | 1.4 | 1.1 |
L | 10.8 | 3.1 | Y | 4.2 | 1.6 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 15.5 | 9.3 | CAT (H) | 3.7 | 4.4 | CCT (P) | 9.5 | 7.2 | AGT (S) | 4.0 | 4.9 |
GCC (A) | 38.9 | 18.3 | CAC (H) | 11.4 | 8.7 | CCC (P) | 17.4 | 10.4 | AGC (S) | 11.8 | 7.6 |
GCG (A) | 29.6 | 15.4 | ATT (I) | 22.6 | 11.6 | CCG (P) | 13.4 | 8.9 | ACT (T) | 12.8 | 8.4 |
GCA (A) | 14.7 | 9.1 | ATC (I) | 11.3 | 7.4 | CCA (P) | 8.0 | 6.7 | ACC (T) | 7.4 | 6.3 |
TGT (C) | 4.4 | 6.7 | ATA (I) | 29.1 | 14.3 | CAG (Q) | 10.5 | 8.1 | ACG (T) | 11.8 | 7.9 |
TGC (C) | 5.1 | 6.8 | AAG (K) | 28.1 | 14.4 | CAA (Q) | 10.0 | 8.0 | ACA (T) | 10.3 | 7.7 |
GAT (D) | 14.9 | 9.5 | AAA (K) | 29.5 | 15.4 | CGT (R) | 3.1 | 4.1 | GTT (V) | 18.7 | 10.4 |
GAC (D) | 27.2 | 13.2 | TTG (L) | 18.4 | 10.3 | CGC (R) | 9.1 | 7.4 | GTC (V) | 18.0 | 9.9 |
GAG (E) | 50.1 | 22.8 | TTA (L) | 21.0 | 11.6 | CGG (R) | 5.9 | 5.8 | GTG (V) | 37.5 | 15.0 |
GAA (E) | 20.3 | 13.2 | CTT (L) | 15.1 | 9.2 | CGA (R) | 1.9 | 3.3 | GTA (V) | 20.5 | 10.9 |
TTT (F) | 19.6 | 11.5 | CTC (L) | 20.6 | 12.2 | AGG (R) | 27.3 | 14.0 | TGG (W) | 14.3 | 11.0 |
TTC (F) | 16.4 | 10.2 | CTG (L) | 19.5 | 11.6 | AGA (R) | 18.6 | 10.2 | TAT (Y) | 17.1 | 10.4 |
GGT (G) | 4.7 | 5.3 | CTA (L) | 13.3 | 9.0 | TCT (S) | 10.1 | 7.3 | TAC (Y) | 25.1 | 12.2 |
GGC (G) | 35.6 | 14.2 | ATG (M) | 18.0 | 9.7 | TCC (S) | 8.4 | 7.0 | TGA (.) | 1.1 | 2.2 |
GGG (G) | 22.1 | 11.6 | AAT (N) | 9.7 | 8.1 | TCG (S) | 7.5 | 6.1 | TAG (.) | 1.4 | 2.4 |
GGA (G) | 12.7 | 8.4 | AAC (N) | 15.4 | 9.4 | TCA (S) | 6.9 | 5.9 | TAA (.) | 2.0 | 2.7 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 0.66 | 0.48 | CAT (H) | 0.44 | 0.57 | CCT (P) | 0.79 | 0.72 | AGT (S) | 0.51 | 0.74 |
GCC (A) | 1.54 | 0.62 | CAC (H) | 1.26 | 0.76 | CCC (P) | 1.38 | 0.86 | AGC (S) | 1.47 | 1.07 |
GCG (A) | 1.17 | 0.56 | ATT (I) | 1.07 | 0.54 | CCG (P) | 1.07 | 0.75 | ACT (T) | 1.18 | 0.85 |
GCA (A) | 0.62 | 0.47 | ATC (I) | 0.56 | 0.45 | CCA (P) | 0.67 | 0.67 | ACC (T) | 0.66 | 0.65 |
TGT (C) | 0.59 | 0.71 | ATA (I) | 1.35 | 0.57 | CAG (Q) | 0.94 | 0.64 | ACG (T) | 1.13 | 0.83 |
TGC (C) | 0.73 | 0.78 | AAG (K) | 0.97 | 0.41 | CAA (Q) | 0.90 | 0.63 | ACA (T) | 0.95 | 0.78 |
GAT (D) | 0.71 | 0.48 | AAA (K) | 1.01 | 0.41 | CGT (R) | 0.31 | 0.48 | GTT (V) | 0.79 | 0.49 |
GAC (D) | 1.23 | 0.51 | TTG (L) | 1.03 | 0.65 | CGC (R) | 0.83 | 0.76 | GTC (V) | 0.74 | 0.45 |
GAG (E) | 1.41 | 0.37 | TTA (L) | 1.17 | 0.70 | CGG (R) | 0.52 | 0.58 | GTG (V) | 1.60 | 0.62 |
GAA (E) | 0.58 | 0.35 | CTT (L) | 0.83 | 0.57 | CGA (R) | 0.18 | 0.39 | GTA (V) | 0.86 | 0.51 |
TTT (F) | 1.06 | 0.53 | CTC (L) | 1.10 | 0.67 | AGG (R) | 2.43 | 1.12 | TGG (W) | - | - |
TTC (F) | 0.88 | 0.52 | CTG (L) | 1.07 | 0.69 | AGA (R) | 1.71 | 1.00 | TAT (Y) | 0.80 | 0.47 |
GGT (G) | 0.27 | 0.37 | CTA (L) | 0.78 | 0.63 | TCT (S) | 1.19 | 0.99 | TAC (Y) | 1.16 | 0.49 |
GGC (G) | 1.86 | 0.69 | ATG (M) | - | - | TCC (S) | 0.99 | 0.92 | TGA (.) | - | - |
GGG (G) | 1.18 | 0.66 | AAT (N) | 0.71 | 0.56 | TCG (S) | 0.96 | 0.93 | TAG (.) | - | - |
GGA (G) | 0.68 | 0.54 | AAC (N) | 1.16 | 0.62 | TCA (S) | 0.82 | 0.82 | TAA (.) | - | - |