| Coordinates | Strand | Length | PID | Gene name | Synonym | FunctionCode | COG | GCRegion | HGT | SimGC | SimMah | Dev.AA | Function |
| 3784..4143 | + | 357 | 18311648 | - | PAE0008 | - | - | H | 2 | 2 | hypothetical protein | ||
| 44370..45236 | - | 864 | 18311700 | - | PAE0082 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 47280..47747 | + | 465 | 18311703 | - | PAE0087 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 47753..48766 | - | 1011 | 18311704 | - | PAE0088 | - | - | + | H | 1 | 0 | hypothetical protein | |
| 56712..57329 | + | 615 | 18311715 | - | PAE0106 | - | - | H | 2 | 1 | hypothetical protein | ||
| 66414..68069 | + | 1653 | 18311725 | - | PAE0119 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 69828..70814 | + | 984 | 18311728 | - | PAE0122 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 71097..71363 | + | 264 | 18311729 | - | PAE0124 | - | - | + | H | 1 | 2 | +G 3.3 | hypothetical protein |
| 71374..72024 | + | 648 | 18311730 | - | PAE0126 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 72118..73725 | + | 1605 | 18311731 | - | PAE0128 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 73722..74171 | + | 447 | 18311732 | - | PAE0129 | - | - | + | H | 1 | 1 | conserved hypothetical protein | |
| 74251..74508 | + | 255 | 18311733 | - | PAE0131 | - | - | + | H | 1 | 2 | +H 3.2 | hypothetical protein |
| 81756..82151 | - | 393 | 18311747 | - | PAE0151 | - | - | H | 1 | 1 | conserved hypothetical protein | ||
| 89519..90745 | + | 1224 | 18311763 | - | PAE0172 | - | - | + | H | 0 | 0 | conserved hypothetical protein | |
| 90956..91741 | - | 783 | 18311765 | - | PAE0175 | - | - | + | H | 1 | 0 | thiamine biosynthetic enzyme (thi1) | |
| 91828..93081 | + | 1251 | 18311766 | - | PAE0176 | - | - | + | H | 1 | 0 | +A 3.3 | metabolite transport protein |
| 93173..93466 | + | 291 | 18311767 | - | PAE0178 | - | - | + | H | 0 | 2 | +C 4.6 | P. aerophilum family 562 protein |
| 93587..94363 | + | 774 | 18311768 | - | PAE0180 | - | - | + | H | 0 | 0 | P. aerophilum family 577 protein | |
| 94405..95193 | - | 786 | 18311769 | - | PAE0181 | - | - | + | H | 2 | 0 | conserved hypothetical protein | |
| 101069..101641 | - | 570 | 18311770 | - | PAE0198 | - | - | + | H | 0 | 2 | conserved hypothetical protein | |
| 101888..102775 | - | 885 | 18311772 | - | PAE0200 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 102756..103604 | - | 846 | 18311773 | - | PAE0201 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 106776..107543 | - | 765 | 18311777 | - | PAE0207 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 111782..112546 | + | 762 | 18311782 | - | PAE0212 | - | - | + | H | 1 | 0 | +F 3.1 | conserved within P. aerophilum |
| 112713..113093 | - | 378 | 18311783 | - | PAE0213 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 113166..113483 | - | 315 | 18311784 | - | PAE0214 | - | - | + | H | 0 | 2 | hypothetical protein | |
| 113621..114325 | - | 702 | 18311785 | - | PAE0215 | - | - | + | H | 0 | 0 | phosphoribosylaminoimidazole-succinocarboxamide synthase (purC) | |
| 114440..115882 | + | 1440 | 18311786 | - | PAE0216 | - | - | + | H | 0 | 0 | phosphoribosylglycinamide synthetase (GARS) (purD) | |
| 115885..117021 | + | 1134 | 18311787 | - | PAE0218 | - | - | + | H | 1 | 0 | amidophosphoribosyltransferase (purF) | |
| 117018..117842 | + | 822 | 18311788 | - | PAE0219 | - | - | + | H | 1 | 0 | phosphoribosylglycinamide formyltransferase | |
| 117827..118762 | + | 933 | 18311789 | - | PAE0220 | - | - | + | H | 0 | 0 | methylenetetrahydrofolate dehydrogenase (folD) | |
| 118752..119684 | + | 930 | 18311790 | - | PAE0221 | - | - | + | H | 1 | 0 | phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (purM) | |
| 119681..120319 | - | 636 | 18311791 | - | PAE0222 | - | - | + | H | 2 | 0 | phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) | |
| 120316..120570 | - | 252 | 18311792 | - | PAE0224 | - | - | + | H | 1 | 2 | conserved hypothetical protein | |
| 120715..122808 | + | 2091 | 18311793 | - | PAE0225 | - | - | + | H | 1 | 0 | phosphoribosylformylglycinamidine synthase II (FGAM synthase II) (purL) | |
| 122811..124073 | + | 1260 | 18311794 | - | PAE0226 | - | - | + | H | 2 | 0 | amidophosphoribosyltransferase (purF) | |
| 124112..124504 | + | 390 | 18311795 | - | PAE0227 | - | - | H | 1 | 2 | conserved within P. aerophilum, authentic frameshift | ||
| 124738..124851 | - | 111 | 18311796 | - | PAE0228 | - | - | + | H | 2 | 2 | +M 6.4 | hypothetical protein |
| 124986..125468 | + | 480 | 18311797 | - | PAE0230 | - | - | + | H | 2 | 0 | paREP8 | |
| 125655..126794 | - | 1137 | 18311798 | - | PAE0232 | - | - | + | H | 2 | 0 | phosphoribosylaminoimidazole carboxylase ATPase subunit (AIRC) (purK) | |
| 127002..127232 | + | 228 | 18311799 | - | PAE0235 | - | - | + | H | 0 | 2 | +L 3.7 | hypothetical protein |
| 127222..127434 | - | 210 | 18311800 | - | PAE0237 | - | - | + | H | 2 | 2 | +S 3.7 | hypothetical protein |
| 128019..128900 | + | 879 | 18311801 | - | PAE0239 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 133123..134535 | + | 1410 | 18311804 | - | PAE0243 | - | - | + | H | 1 | 0 | hypothetical protein | |
| 161995..162159 | - | 162 | 18311836 | - | PAE0288 | - | - | - | H | 2 | 2 | +L 4.8 | conserved within P. aerophilum |
| 162146..163159 | - | 1011 | 18311837 | - | PAE0289 | - | - | - | H | 1 | 0 | metallo cofactor biosynthesis protein, conjectural | |
| 163159..163416 | - | 255 | 18311838 | - | PAE0290 | - | - | - | H | 2 | 2 | +HV 3.2 3.4 | hypothetical protein |
| 163413..163982 | - | 567 | 18311839 | - | PAE0292 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 164013..164492 | + | 477 | 18311840 | - | PAE0293 | - | - | - | H | 1 | 1 | P. aerophilum family 321 protein | |
| 219654..219962 | + | 306 | 18311910 | - | PAE0391a | - | - | H | 1 | 2 | conserved protein, degenerate | ||
| 222640..222990 | + | 348 | 18311917 | - | PAE0401 | - | - | H | 1 | 1 | conserved hypothetical protein | ||
| 226953..227087 | + | 132 | 18311924 | - | PAE0412 | - | - | + | H | 1 | 2 | hypothetical protein | |
| 227117..227578 | + | 459 | 18311925 | - | PAE0413 | - | - | + | H | 1 | 1 | hypothetical protein | |
| 227875..228441 | + | 564 | 18311927 | - | PAE0417 | - | - | + | H | 0 | 0 | paREP1 | |
| 228549..228746 | + | 195 | 18311928 | - | PAE0418 | - | - | + | H | 0 | 2 | +P 4.6 | hypothetical protein |
| 228788..229885 | + | 1095 | 18311929 | - | PAE0419 | - | - | + | H | 2 | 0 | glycosyl transferase, putative | |
| 229882..230079 | + | 195 | 18311930 | - | PAE0420 | - | - | + | H | 0 | 2 | +D 4.0 | conserved hypothetical protein |
| 230101..230646 | + | 543 | 18311931 | - | PAE0422 | - | - | + | H | 1 | 0 | paREP1 | |
| 230643..231641 | + | 996 | 18311932 | - | PAE0423 | - | - | + | H | 0 | 0 | P. aerophilum family 1964 protein | |
| 232338..232556 | + | 216 | 18311935 | - | PAE0427 | - | - | + | H | 1 | 2 | +I 3.4 | conserved hypothetical protein |
| 232901..233893 | + | 990 | 18311936 | - | PAE0430 | - | - | + | H | 2 | 0 | glycosyltransferase (type 1) | |
| 233901..235070 | + | 1167 | 18311937 | - | PAE0431 | - | - | + | H | 1 | 0 | glycosyltransferase (type 1) | |
| 235050..236390 | - | 1338 | 18311938 | - | PAE0432 | - | - | + | H | 2 | 0 | +L 3.4 | hypothetical protein |
| 236353..236883 | + | 528 | 18311939 | - | PAE0433 | - | - | + | H | 1 | 0 | hypothetical protein | |
| 236871..237203 | - | 330 | 18311940 | - | PAE0434 | - | - | + | H | 2 | 2 | +A 4.4 | hypothetical protein |
| 237185..237970 | - | 783 | 18311941 | - | PAE0435 | - | - | + | H | 2 | 2 | +ALW 3.3 3.2 4.6 | hypothetical protein |
| 237967..239244 | - | 1275 | 18311942 | - | PAE0436 | - | - | + | H | 2 | 0 | +A 3.4 | hypothetical protein |
| 239296..240480 | + | 1182 | 18311943 | - | PAE0437 | - | - | + | H | 1 | 0 | glycosyltransferase (type 2) | |
| 240552..240908 | + | 354 | 18311944 | - | PAE0438 | - | - | + | H | 1 | 0 | conserved within P. aerophilum | |
| 241225..242160 | + | 933 | 18311945 | - | PAE0439 | - | - | - | H | 1 | 0 | dolichol-phosphate mannosyltransferase | |
| 243247..244068 | + | 819 | 18311947 | - | PAE0441 | - | - | - | H | 2 | 0 | glycosyltransferase (type 2) | |
| 244436..245560 | + | 1122 | 18311948 | - | PAE0442 | - | - | - | H | 2 | 0 | glycosyltransferase (type 1) | |
| 245595..246314 | + | 717 | 18311949 | - | PAE0443 | - | - | - | H | 2 | 0 | +N 3.2 | conserved protein |
| 246298..249042 | + | 2742 | 18311950 | - | PAE0445 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 252540..252743 | + | 201 | 18311954 | - | PAE0458 | - | - | - | H | 0 | 2 | +N 3.8 | hypothetical protein |
| 252772..254286 | + | 1512 | 18311955 | - | PAE0459 | - | - | - | H | 1 | 0 | +NT 3.3 3.7 | hypothetical protein |
| 255103..255459 | + | 354 | 18311956 | - | PAE0462 | - | - | - | H | 0 | 2 | hypothetical protein | |
| 257226..258146 | + | 918 | 18311959 | - | PAE0466 | - | - | - | H | 1 | 0 | hypothetical protein | |
| 258622..258960 | - | 336 | 18311960 | - | PAE0467 | - | - | - | H | 1 | 2 | glycosyltransferase (type 1) | |
| 259081..259293 | - | 210 | 18311961 | - | PAE0468 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 268704..269144 | + | 438 | 18311978 | - | PAE0492 | - | - | H | 1 | 2 | paREP15, putative coiled-coil protein | ||
| 270282..270452 | + | 168 | 18311979 | - | PAE0496 | - | - | - | H | 1 | 2 | +TW 3.7 3.6 | hypothetical protein |
| 271218..271451 | + | 231 | 18311981 | - | PAE0498 | - | - | - | H | 1 | 2 | +H 3.7 | hypothetical protein |
| 271587..271790 | + | 201 | 18311982 | - | PAE0499 | - | - | - | H | 1 | 2 | +LS 4.7 5.7 | hypothetical protein |
| 273325..273663 | + | 336 | 18311983 | - | PAE0505 | - | - | - | H | 0 | 2 | conserved within P. aerophilum | |
| 273975..274706 | + | 729 | 18311984 | - | PAE0506 | - | - | - | H | 1 | 2 | +DN 3.2 3.4 | paREP15, putative coiled-coil protein |
| 284869..285303 | - | 432 | 18311996 | - | PAE0534 | - | - | - | H | 0 | 2 | P. aerophilum family 1964 protein, degenerate | |
| 286156..286281 | + | 123 | 18311998 | - | PAE0538 | - | - | - | H | 1 | 2 | +C 3.5 | conserved within P. aerophilum |
| 286523..287941 | - | 1416 | 18311999 | - | PAE0539 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 287989..289197 | + | 1206 | 18312000 | - | PAE0540 | - | - | - | H | 2 | 0 | glycosyltransferase (type 1) | |
| 289194..290345 | + | 1149 | 18312001 | - | PAE0541 | - | - | - | H | 2 | 0 | glycosyltransferase (type 1) | |
| 290342..291508 | + | 1164 | 18312002 | - | PAE0542 | - | - | - | H | 2 | 0 | glycosyltransferase (type 1) | |
| 291498..292664 | - | 1164 | 18312003 | - | PAE0543 | - | - | - | H | 2 | 0 | glycosyltransferase (type 1) | |
| 292661..293611 | - | 948 | 18312004 | - | PAE0544 | - | - | - | H | 2 | 0 | glycosyltransferase (type 2) | |
| 293608..294663 | - | 1053 | 18312005 | - | PAE0545 | - | - | - | H | 2 | 1 | +N 3.3 | hypothetical protein |
| 296071..296583 | - | 510 | 18312007 | - | PAE0548 | - | - | H | 1 | 2 | paREP7 | ||
| 300890..301762 | + | 870 | 18312013 | - | PAE0558 | - | - | H | 2 | 1 | conserved within P. aerophilum | ||
| 405821..406195 | + | 372 | 18312136 | - | PAE0730 | - | - | - | H | 0 | 0 | hypothetical protein | |
| 406222..406458 | + | 234 | 18312137 | - | PAE0731 | - | - | - | H | 2 | 2 | +N 4.0 | transcriptional regulatory protein, conjectural |
| 406526..406729 | + | 201 | 18312138 | - | PAE0732 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 407465..408454 | + | 987 | 18312140 | - | PAE0734 | - | - | - | H | 0 | 0 | replication factor C small subunit | |
| 408454..409722 | + | 1266 | 18312141 | - | PAE0735 | - | - | - | H | 0 | 0 | replication factor C large subunit | |
| 409722..410018 | + | 294 | 18312142 | - | PAE0736 | - | - | - | H | 2 | 2 | +ACIK -3.2 4.6 3.1 3.2 | hypothetical protein |
| 410093..411262 | + | 1167 | 18312143 | - | PAE0737 | - | - | - | H | 1 | 0 | cell division control protein 6 (cdc6), putative | |
| 411569..412102 | + | 531 | 18312145 | - | PAE0739 | - | - | - | H | 1 | 0 | conserved hypothetical protein | |
| 412177..413277 | + | 1098 | 18312146 | - | PAE0741 | - | - | - | H | 0 | 0 | translation initiation factor aIF-2B alpha subunit | |
| 413383..413700 | + | 315 | 18312147 | - | PAE0742 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 413700..414839 | + | 1137 | 18312148 | - | PAE0743 | - | - | - | H | 0 | 0 | RNA binding protein (fmu, PCNA P120 homolog), probable | |
| 414823..415050 | - | 225 | 18312149 | - | PAE0744 | - | - | - | H | 2 | 2 | +CN 8.6 4.2 | hypothetical protein |
| 415095..415736 | + | 639 | 18312150 | - | PAE0745 | - | - | - | H | 0 | 0 | conserved hypothetical protein | |
| 416445..416615 | - | 168 | 18312152 | - | PAE0748 | - | - | - | H | 1 | 2 | +M 7.3 | hypothetical protein |
| 416680..417966 | - | 1284 | 18312153 | - | PAE0749 | - | - | - | H | 1 | 0 | conserved protein (nfeD homolog) | |
| 419345..419662 | + | 315 | 18312155 | - | PAE0752 | - | - | - | H | 2 | 2 | +GIK -3.4 3.2 4.9 | hypothetical protein |
| 419659..420687 | + | 1026 | 18312156 | - | PAE0753 | - | - | - | H | 2 | 0 | H+-transporting ATP synthase subunit C (atpC) | |
| 420967..421116 | - | 147 | 18312158 | - | PAE0756 | - | - | - | H | 2 | 2 | +IK 3.6 3.7 | hypothetical protein |
| 421335..421934 | - | 597 | 18312159 | - | PAE0758 | - | - | - | H | 0 | 0 | H+-transporting ATP synthase subunit D (atpD) | |
| 422781..423251 | + | 468 | 18312161 | - | PAE0760 | - | - | - | H | 2 | 0 | +I 4.1 | hypothetical protein |
| 423353..423907 | - | 552 | 18312162 | - | PAE0762 | - | - | - | H | 1 | 1 | hypothetical protein | |
| 424026..425432 | + | 1404 | 18312163 | - | PAE0763 | - | - | - | H | 0 | 0 | hypothetical protein | |
| 425414..426703 | - | 1287 | 18312164 | - | PAE0764 | - | - | - | H | 0 | 0 | phosphomannomutase (pmm) | |
| 427934..428533 | - | 597 | 18312166 | - | PAE0768 | - | - | - | H | 1 | 1 | orotidine-5'-monophosphate decarboxylase (pyrF) | |
| 428575..429492 | + | 915 | 18312167 | - | PAE0770 | - | - | - | H | 0 | 0 | aspartate carbamoyltransferase catalytic subunit (pyrB) | |
| 429489..430019 | + | 528 | 18312168 | - | PAE0771 | - | - | - | H | 0 | 0 | N-acyltransferase | |
| 430063..431592 | + | 1527 | 18312169 | - | PAE0772 | - | - | - | H | 0 | 0 | +M 4.6 | hypothetical protein |
| 433267..433779 | + | 510 | 18312171 | - | PAE0776 | - | - | - | H | 0 | 0 | hypothetical protein | |
| 433813..435300 | + | 1485 | 18312172 | - | PAE0777 | - | - | - | H | 0 | 0 | queuine tRNA-ribosyltransferase | |
| 439023..439313 | - | 288 | 18312178 | - | PAE0789 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 439522..439764 | + | 240 | 18312179 | - | PAE0790 | - | - | - | H | 1 | 2 | small nuclear ribonucleoprotein homolog (Sm-like) | |
| 439982..440584 | + | 600 | 18312180 | - | PAE0791 | - | - | - | H | 0 | 0 | conserved hypothetical protein | |
| 441514..441897 | - | 381 | 18312182 | - | PAE0794 | - | - | - | H | 0 | 0 | cytidine deaminase | |
| 441935..442873 | + | 936 | 18312183 | - | PAE0796 | - | - | - | H | 1 | 0 | hypothetical protein | |
| 442904..443686 | + | 780 | 18312184 | - | PAE0797 | - | - | - | H | 0 | 0 | short chain dehydrogenase | |
| 443675..444967 | - | 1290 | 18312185 | - | PAE0798 | - | - | - | H | 0 | 0 | serine hydroxymethyltransferase | |
| 444998..445732 | - | 732 | 18312186 | - | PAE0799 | - | - | - | H | 0 | 0 | molybdenum cofactor biosynthesis protein (moaC) | |
| 445729..446058 | - | 327 | 18312187 | - | PAE0800 | - | - | - | H | 2 | 2 | +CK 4.0 3.4 | hypothetical protein |
| 577374..577658 | - | 282 | 18312329 | - | PAE0986 | - | - | + | H | 0 | 2 | phosphoribosyl-ATP pyrophosphohydrolase | |
| 577655..578761 | - | 1104 | 18312330 | - | PAE0988 | - | - | + | H | 1 | 0 | histidinol dehydrogenase (hisD) | |
| 578758..579519 | - | 759 | 18312331 | - | PAE0989 | - | - | + | H | 1 | 0 | histidine biosynthesis protein (hisF,cyclase) | |
| 579577..580137 | + | 558 | 18312332 | - | PAE0990 | - | - | + | H | 1 | 0 | +H 3.3 | imidazoleglycerol-phosphate dehydratase |
| 580134..580823 | + | 687 | 18312333 | - | PAE0991 | - | - | + | H | 0 | 0 | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA) | |
| 580805..580996 | + | 189 | 18312334 | - | PAE0992 | - | - | + | H | 0 | 2 | hypothetical protein | |
| 582050..582586 | - | 534 | 18312337 | - | PAE0996 | - | - | H | 1 | 2 | hypothetical protein | ||
| 733591..734160 | + | 567 | 18312507 | - | PAE1261 | - | - | H | 2 | 2 | conserved hypothetical protein | ||
| 742897..743886 | - | 987 | 18312514 | - | PAE1270 | - | - | - | H | 1 | 0 | conserved hypothetical protein | |
| 745666..747879 | + | 2211 | 18312516 | - | PAE1272 | - | - | - | H | 0 | 0 | trehalose-6-phosphate synthase | |
| 747870..749078 | - | 1206 | 18312517 | - | PAE1273 | - | - | - | H | 0 | 0 | glycosyl transferase, conjectural | |
| 749075..749671 | - | 594 | 18312518 | - | PAE1275 | - | - | - | H | 2 | 1 | +I 4.0 | conserved within P. aerophilum |
| 750002..750667 | + | 663 | 18312519 | - | PAE1277 | - | - | - | H | 1 | 0 | conserved hypothetical protein | |
| 763997..765454 | + | 1455 | 18312532 | - | PAE1293 | - | - | - | H | 2 | 0 | conserved hypothetical protein | |
| 767212..768180 | - | 966 | 18312535 | - | PAE1297 | - | - | - | H | 0 | 0 | dipeptide transport ATP-binding protein | |
| 768177..769241 | - | 1062 | 18312536 | - | PAE1298 | - | - | - | H | 1 | 0 | dipeptide ABC transporter, permease protein | |
| 769243..770241 | - | 996 | 18312537 | - | PAE1299 | - | - | - | H | 2 | 0 | +F 3.1 | dipeptide ABC transporter, permease protein |
| 770248..772461 | - | 2211 | 18312538 | - | PAE1300 | - | - | - | H | 1 | 0 | dipeptide binding protein | |
| 782751..783824 | - | 1071 | 18312553 | - | PAE1321 | - | - | - | H | 0 | 0 | multiple sugar-binding transport ATP-binding | |
| 783821..784654 | - | 831 | 18312554 | - | PAE1322 | - | - | - | H | 1 | 0 | +F 3.1 | multiple sugar transport permease |
| 784651..785529 | - | 876 | 18312555 | - | PAE1323 | - | - | - | H | 1 | 0 | multiple sugar transport permease | |
| 785526..786839 | - | 1311 | 18312556 | - | PAE1324 | - | - | - | H | 0 | 0 | multiple sugar binding protein | |
| 786815..786934 | - | 117 | 18312557 | - | PAE1325 | - | - | - | H | 2 | 2 | +LN 3.9 4.0 | hypothetical protein |
| 787362..787487 | + | 123 | 18312558 | - | PAE1326 | - | - | - | H | 1 | 2 | +C 3.5 | hypothetical protein |
| 789004..789447 | + | 441 | 18312561 | - | PAE1329 | - | - | H | 1 | 1 | conserved hypothetical protein | ||
| 844347..844502 | - | 153 | 18312623 | - | PAE1419 | - | - | - | H | 2 | 2 | +AIMNY -3.2 6.0 4.2 5.6 3.5 | hypothetical protein |
| 844477..844605 | - | 126 | 18312624 | - | PAE1420 | - | - | - | H | 2 | 2 | +Y 4.9 | hypothetical protein |
| 845031..845528 | + | 495 | 18312626 | - | PAE1422 | - | - | - | H | 1 | 1 | hypothetical protein | |
| 845502..847358 | - | 1854 | 18312627 | - | PAE1423 | - | - | - | H | 0 | 0 | carbon starvation protein A homolog | |
| 847432..847758 | + | 324 | 18312628 | - | PAE1425 | - | - | - | H | 2 | 2 | +K 4.3 | hypothetical protein |
| 847981..848883 | + | 900 | 18312629 | - | PAE1427 | - | - | - | H | 1 | 0 | arsenical pump-driving ATPase | |
| 849549..849719 | - | 168 | 18312631 | - | PAE1430 | - | - | - | H | 2 | 2 | +FM 6.5 3.6 | conserved within P. aerophilum |
| 849883..850365 | + | 480 | 18312632 | - | PAE1432 | - | - | - | H | 1 | 2 | P. aerophilum family 321 protein | |
| 957301..957981 | - | 678 | 18312769 | - | PAE1634 | - | - | - | H | 0 | 0 | hypothetical protein | |
| 957978..958970 | - | 990 | 18312770 | - | PAE1635 | - | - | - | H | 1 | 0 | conserved hypothetical protein | |
| 958970..959959 | - | 987 | 18312771 | - | PAE1636 | - | - | - | H | 2 | 0 | +EQ 3.1 3.2 | conserved hypothetical protein |
| 960064..960777 | + | 711 | 18312772 | - | PAE1638 | - | - | - | H | 0 | 0 | conserved hypothetical protein | |
| 961333..961644 | + | 309 | 18312774 | - | PAE1641 | - | - | - | H | 2 | 2 | +FI 3.1 5.5 | hypothetical protein |
| 961646..961984 | - | 336 | 18312775 | - | PAE1642 | - | - | - | H | 2 | 2 | +I 4.0 | hypothetical protein |
| 961981..962295 | - | 312 | 18312776 | - | PAE1643 | - | - | - | H | 1 | 2 | +I 3.2 | hypothetical protein |
| 992574..993041 | - | 465 | 18312812 | - | PAE1694 | - | - | H | 1 | 1 | hypothetical protein | ||
| 1001462..1002004 | - | 540 | 18312826 | - | PAE1715 | - | - | H | 2 | 1 | conserved hypothetical protein | ||
| 1081006..1081740 | - | 732 | 18312917 | - | PAE1837 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 1081846..1083360 | + | 1512 | 18312918 | - | PAE1839 | - | - | + | H | 0 | 0 | glycosyl transferase, putative | |
| 1083329..1084777 | - | 1446 | 18312919 | - | PAE1840 | - | - | + | H | 1 | 0 | lysyl-tRNA synthetase | |
| 1084806..1085768 | - | 960 | 18312920 | - | PAE1841 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 1085796..1086431 | - | 633 | 18312921 | - | PAE1842 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 1086452..1087879 | - | 1425 | 18312922 | - | PAE1844 | - | - | + | H | 2 | 0 | conserved hypothetical protein | |
| 1088079..1088978 | - | 897 | 18312923 | - | PAE1846 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 1102654..1103301 | + | 645 | 18312931 | - | PAE1863 | - | - | H | 1 | 1 | hypothetical protein | ||
| 1121422..1121901 | - | 477 | 18312955 | - | PAE1901 | - | - | H | 2 | 1 | paREP8 | ||
| 1122364..1122705 | + | 339 | 18312957 | - | PAE1903 | - | - | H | 1 | 2 | conserved hypothetical protein | ||
| 1144439..1144933 | - | 492 | 18312984 | - | PAE1944 | - | - | + | H | 1 | 2 | +V 3.5 | hypothetical protein |
| 1147164..1147835 | - | 669 | 18312986 | - | PAE1948 | - | - | + | H | 1 | 0 | +P 3.1 | P. aerophilum family 453, possible regulatory protein |
| 1147898..1148155 | - | 255 | 18312987 | - | PAE1949 | - | - | + | H | 1 | 2 | paREP11 | |
| 1149050..1149451 | - | 399 | 18312990 | - | PAE1955 | - | - | + | H | 0 | 2 | hypothetical protein | |
| 1149483..1150721 | - | 1236 | 18312991 | - | PAE1956 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 1151969..1152874 | - | 903 | 18312994 | - | PAE1960 | - | - | + | H | 1 | 0 | 3-dehydroquinate dehydratase (aroD) / possible chorismate mutase (multidomain protein) | |
| 1152886..1153749 | - | 861 | 18312995 | - | PAE1962 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 1153763..1154755 | + | 990 | 18312996 | - | PAE1964 | - | - | + | H | 1 | 0 | aspartate aminotransferase (aspC), conjectural | |
| 1195907..1196233 | + | 324 | 18313046 | - | PAE2031 | - | - | H | 2 | 2 | conserved hypothetical protein | ||
| 1197484..1198818 | + | 1332 | 18313049 | - | PAE2035 | - | - | + | H | 0 | 0 | D-lactate dehydrogenase | |
| 1198796..1199275 | - | 477 | 18313050 | - | PAE2037 | - | - | + | H | 1 | 0 | +L 4.0 | hypothetical protein |
| 1199272..1200204 | - | 930 | 18313051 | - | PAE2038 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 1200242..1201147 | + | 903 | 18313052 | - | PAE2039 | - | - | + | H | 0 | 0 | moxR related protein | |
| 1201144..1202058 | - | 912 | 18313053 | - | PAE2040 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 1202055..1203536 | - | 1479 | 18313054 | - | PAE2041 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 1203865..1204227 | - | 360 | 18313055 | - | PAE2042 | - | - | + | H | 0 | 1 | P. aerophilum family 453, possible regulatory protein | |
| 1204270..1205445 | - | 1173 | 18313056 | - | PAE2044 | - | - | + | H | 1 | 0 | P. aerophilum family 417, putative ATP binding | |
| 1205442..1205735 | - | 291 | 18313057 | - | PAE2046 | - | - | + | H | 1 | 2 | +R 3.0 | P. aerophilum family 453 |
| 1207186..1208043 | + | 855 | 18313059 | - | PAE2050 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 1210031..1211833 | + | 1800 | 18313061 | - | PAE2052 | - | - | + | H | 0 | 0 | aldehyde ferredoxin oxidoreductase (aor) | |
| 1211822..1213036 | - | 1212 | 18313062 | - | PAE2053 | - | - | + | H | 0 | 0 | pleiotropic regulatory protein, conjectural | |
| 1213066..1213503 | + | 435 | 18313063 | - | PAE2054 | - | - | + | H | 0 | 2 | +A 3.9 | hypothetical protein |
| 1214311..1214391 | - | 78 | 18313067 | - | PAE2057a | - | - | + | H | 0 | 2 | +EGRW 6.9 -3.4 5.7 5.7 | paREP6 part 1, authentic frameshift |
| 1214438..1214980 | + | 540 | 18313068 | - | PAE2058 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 1214918..1216144 | - | 1224 | 18313069 | - | PAE2059 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 1216201..1217016 | - | 813 | 18313070 | - | PAE2060 | - | - | + | H | 0 | 0 | conserved within P. aerophilum, part 2, authentic frameshift | |
| 1217017..1217382 | - | 363 | 18313071 | - | PAE2062 | - | - | + | H | 2 | 2 | +S 3.8 | conserved within P. aerophilum, part 1, authentic frameshift |
| 1217956..1218432 | - | 474 | 18313072 | - | PAE2063 | - | - | + | H | 0 | 0 | paREP2b | |
| 1218466..1218582 | - | 114 | 18313073 | - | PAE2066 | - | - | + | H | 1 | 2 | +W 3.5 | paREP2b |
| 1219141..1219722 | - | 579 | 18313074 | - | PAE2069 | - | - | + | H | 0 | 2 | hypothetical protein | |
| 1219748..1220965 | + | 1215 | 18313075 | - | PAE2070 | - | - | + | H | 0 | 0 | acyl-CoA dehydrogenase | |
| 1248583..1249062 | - | 477 | 18313111 | - | PAE2120 | - | - | H | 1 | 1 | transcription initiation factor IIB, conjectural | ||
| 1249190..1249504 | + | 312 | 18313112 | - | PAE2121 | - | - | H | 2 | 2 | hypothetical protein | ||
| 1301357..1301902 | - | 543 | 18313175 | - | PAE2201 | - | - | H | 1 | 1 | conserved hypothetical protein | ||
| 1383206..1383517 | + | 309 | 18313262 | - | PAE2325 | - | - | H | 1 | 2 | divalent cation tolerance protein, conjectural | ||
| 1395426..1395788 | - | 360 | 18313277 | - | PAE2344 | - | - | H | 1 | 2 | hypothetical protein | ||
| 1401981..1402265 | + | 282 | 18313286 | - | PAE2358 | - | - | - | H | 2 | 2 | +EK 3.5 5.3 | hypothetical protein |
| 1402253..1402981 | - | 726 | 18313287 | - | PAE2359 | - | - | - | H | 0 | 0 | hypothetical protein | |
| 1403021..1404025 | + | 1002 | 18313288 | - | PAE2361 | - | - | - | H | 0 | 0 | sugar phospate transferase | |
| 1406848..1407363 | + | 513 | 18313290 | - | PAE2363 | - | - | - | H | 0 | 0 | +N 3.0 | hypothetical protein |
| 1407337..1408185 | - | 846 | 18313291 | - | PAE2364 | - | - | - | H | 1 | 0 | conserved protein with 4 CBS domains | |
| 1416466..1416894 | + | 426 | 18313303 | - | PAE2382 | - | - | H | 2 | 2 | conserved protein with 2 CBS domains | ||
| 1474099..1474443 | + | 342 | 18313370 | - | PAE2472 | - | - | H | 2 | 2 | conserved protein associated with acetyl-CoA C-acyltransferase | ||
| 1492090..1492620 | + | 528 | 18313386 | - | PAE2493 | - | - | H | 1 | 1 | paREP7 | ||
| 1505278..1505736 | - | 456 | 18313404 | - | PAE2521 | - | - | H | 1 | 2 | paREP8 | ||
| 1536116..1536370 | - | 252 | 18313442 | - | PAE2574 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 1536367..1537170 | - | 801 | 18313443 | - | PAE2575 | - | - | - | H | 1 | 0 | phosphoadenosine phosphosulfate reductase (PAPS reductase) | |
| 1537172..1537783 | - | 609 | 18313444 | - | PAE2576 | - | - | - | H | 2 | 2 | +M 3.2 | hypothetical protein |
| 1537780..1539384 | - | 1602 | 18313445 | - | PAE2577 | - | - | - | H | 1 | 0 | ferredoxin-nitrite reductase | |
| 1539494..1540360 | + | 864 | 18313446 | - | PAE2578 | - | - | - | H | 1 | 0 | conserved hypothetical protein | |
| 1540714..1541409 | + | 693 | 18313448 | - | PAE2582 | - | - | - | H | 2 | 0 | +N 3.4 | thiosulfate sulfurtransferase |
| 1593573..1593902 | - | 327 | 18313513 | - | PAE2682 | - | - | + | H | 1 | 2 | +A 3.3 | hypothetical protein |
| 1594684..1595376 | - | 690 | 18313515 | - | PAE2685 | - | - | + | H | 0 | 0 | conserved hypothetical protein | |
| 1595400..1595780 | - | 378 | 18313516 | - | PAE2686 | - | - | + | H | 1 | 0 | glcG homolog | |
| 1595777..1596772 | - | 993 | 18313517 | - | PAE2687 | - | - | + | H | 2 | 0 | alcohol dehydrogenase (Zinc) | |
| 1596769..1597689 | - | 918 | 18313518 | - | PAE2688 | - | - | + | H | 1 | 0 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, conjectural | |
| 1601630..1602082 | - | 450 | 18313523 | - | PAE2695 | - | - | H | 1 | 1 | conserved within P. aerophilum | ||
| 1617678..1618208 | - | 528 | 18313544 | - | PAE2726 | - | - | H | 1 | 2 | P. aerophilum family 66 protein, interruption-N | ||
| 1631265..1631861 | - | 594 | 18313560 | - | PAE2747 | - | - | - | H | 1 | 2 | +MW 3.8 3.3 | hypothetical protein |
| 1631965..1632441 | + | 474 | 18313561 | - | PAE2748 | - | - | - | H | 0 | 0 | hypothetical protein | |
| 1632711..1633220 | + | 507 | 18313562 | - | PAE2750 | - | - | - | H | 1 | 0 | hypothetical protein | |
| 1633202..1634227 | + | 1023 | 18313563 | - | PAE2751 | - | - | - | H | 2 | 0 | cytochrome C-type biogenesis protein (ccdA), conjectural | |
| 1635106..1635507 | - | 399 | 18313565 | - | PAE2754 | - | - | H | 1 | 2 | conserved hypothetical protein | ||
| 1649015..1649386 | + | 369 | 18313584 | - | PAE2784 | - | - | H | 1 | 2 | conserved hypothetical protein | ||
| 1664059..1664460 | + | 399 | 18313606 | - | PAE2813 | - | - | H | 1 | 1 | hypothetical protein | ||
| 1673133..1673546 | + | 411 | 18313618 | - | PAE2829 | - | - | H | 1 | 2 | conserved hypothetical protein | ||
| 1756212..1756526 | - | 312 | 18313713 | - | PAE2950 | - | - | H | 1 | 2 | hypothetical protein | ||
| 1789190..1789504 | + | 312 | 18313755 | - | PAE3004 | - | - | H | 1 | 2 | hypothetical protein | ||
| 1861604..1862137 | - | 531 | 18313843 | - | PAE3125 | - | - | H | 1 | 1 | P. aerophilum family 70 protein | ||
| 1901244..1902008 | + | 762 | 18313888 | - | PAE3188 | - | - | + | H | 1 | 0 | hypothetical protein | |
| 1901965..1902636 | - | 669 | 18313889 | - | PAE3189 | - | - | + | H | 0 | 0 | conserved hypothetical protein | |
| 1902925..1903014 | + | 87 | 18313891 | - | PAE3193 | - | - | + | H | 2 | 2 | +A 4.5 | hypothetical protein |
| 1903036..1903455 | + | 417 | 18313892 | - | PAE3193a | - | - | + | H | 2 | 2 | possible heat shock protein, htpX homolog part 1, authentic frameshift | |
| 1903367..1903951 | + | 582 | 18313893 | - | PAE3195 | - | - | + | H | 1 | 0 | possible heat shock protein, htpX homolog part 2, authentic frameshift | |
| 1904252..1905253 | + | 999 | 18313894 | - | PAE3196 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 1977497..1979167 | - | 1668 | 18313974 | - | PAE3300 | - | - | - | H | 0 | 0 | acetolactate synthase large subunit (ilvB) | |
| 1979284..1979724 | - | 438 | 18313975 | - | PAE3301 | - | - | - | H | 1 | 2 | mutT/nudix family protein | |
| 1980249..1980563 | - | 312 | 18313977 | - | PAE3304 | - | - | - | H | 1 | 2 | +C 4.3 | hypothetical protein |
| 1981116..1982408 | - | 1290 | 18313978 | - | PAE3309 | - | - | - | H | 0 | 0 | mRNA 3'-end processing factor, conjectural | |
| 1983707..1984135 | - | 426 | 18313981 | - | PAE3314 | - | - | - | H | 0 | 0 | hypothetical protein | |
| 1984167..1985132 | - | 963 | 18313982 | - | PAE3316 | - | - | - | H | 1 | 0 | oligopeptide transport ATP-binding protein, putative | |
| 1985135..1986103 | - | 966 | 18313983 | - | PAE3317 | - | - | - | H | 0 | 0 | oligopeptide transport ATP-binding protein, putative | |
| 1986150..1986932 | + | 780 | 18313984 | - | PAE3318 | - | - | - | H | 0 | 0 | kinase, conjectural | |
| 1986898..1987758 | - | 858 | 18313985 | - | PAE3319 | - | - | - | H | 1 | 0 | conserved protein with 2 CBS domains | |
| 1987908..1988831 | + | 921 | 18313986 | - | PAE3320 | - | - | - | H | 0 | 0 | D-3-phosphoglycerate dehydrogenase (serA) | |
| 1988828..1989847 | + | 1017 | 18313987 | - | PAE3321 | - | - | - | H | 0 | 0 | aminotransferase (class 5) | |
| 1989828..1990622 | + | 792 | 18313988 | - | PAE3323 | - | - | - | H | 0 | 0 | conserved hypothetical protein | |
| 1990603..1991025 | - | 420 | 18313989 | - | PAE3324 | - | - | H | 1 | 1 | conserved hypothetical protein | ||
| 1991088..1992347 | - | 1257 | 18313990 | - | PAE3325 | - | - | - | H | 0 | 0 | tRNA nucleotidyltransferase | |
| 1992344..1992907 | - | 561 | 18313991 | - | PAE3326 | - | - | - | H | 1 | 0 | conserved hypothetical protein | |
| 1992904..1993341 | - | 435 | 18313992 | - | PAE3327 | - | - | - | H | 1 | 0 | DNA binding transcriptional repressor, conjectural | |
| 1993374..1994270 | - | 894 | 18313993 | - | PAE3329 | - | - | - | H | 0 | 0 | transcription initiation factor IIB (TFIIB) | |
| 1994267..1994467 | - | 198 | 18313994 | - | PAE3330 | - | - | - | H | 2 | 2 | +Y 3.1 | hypothetical protein |
| 1995304..1996053 | + | 747 | 18313997 | - | PAE3333 | - | - | - | H | 0 | 0 | conserved hypothetical protein | |
| 1996428..1996763 | + | 333 | 18313999 | - | PAE3335 | - | - | - | H | 2 | 2 | +T 3.2 | conserved hypothetical protein |
| 1999160..1999522 | + | 360 | 18314004 | - | PAE3340 | - | - | H | 1 | 1 | translation initiation factor SUI1 homolog | ||
| 2028820..2029158 | - | 336 | 18314032 | - | PAE3387 | - | - | H | 1 | 1 | P. aerophilum family 453, possible regulatory protein part 2, authentic frameshift | ||
| 2062651..2063100 | - | 447 | 18314068 | - | PAE3441 | - | - | H | 2 | 2 | conserved hypothetical protein part 1, authentic frameshift | ||
| 2071010..2071219 | - | 207 | 18314076 | - | PAE3452 | - | - | - | H | 2 | 2 | +K 3.1 | conserved within P. aerophilum |
| 2072150..2075149 | + | 2997 | 18314078 | - | PAE3454 | - | - | - | H | 0 | 0 | pullulanase | |
| 2075181..2076455 | + | 1272 | 18314079 | - | PAE3455 | - | - | - | H | 0 | 0 | maltose ABC transporter, maltose binding protein | |
| 2076456..2077379 | + | 921 | 18314080 | - | PAE3456 | - | - | - | H | 1 | 0 | maltose ABC transporter, permease protein | |
| 2077369..2078175 | + | 804 | 18314081 | - | PAE3457 | - | - | - | H | 0 | 0 | maltose ABC transporter, permease protein | |
| 2078839..2079882 | - | 1041 | 18314084 | - | PAE3461 | - | - | - | H | 0 | 0 | heat shock protein, htpX homolog, conjectural | |
| 2080434..2080739 | + | 303 | 18314085 | - | PAE3464 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 2116048..2116950 | - | 900 | 18314134 | - | PAE3530 | - | - | + | H | 0 | 0 | +R 3.3 | paREP12, internal deletion |
| 2117092..2118300 | - | 1206 | 18314135 | - | PAE3532 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 2118384..2119985 | - | 1599 | 18314136 | - | PAE3533 | - | - | + | H | 2 | 0 | +P 3.5 | hypothetical protein |
| 2120034..2120825 | - | 789 | 18314137 | - | PAE3535 | - | - | + | H | 2 | 2 | hypothetical protein | |
| 2121046..2121861 | - | 813 | 18314138 | - | PAE3538 | - | - | + | H | 2 | 0 | hypothetical protein | |
| 2121970..2122689 | - | 717 | 18314139 | - | PAE3540 | - | - | + | H | 2 | 1 | hypothetical protein | |
| 2122854..2123009 | - | 153 | 18314140 | - | PAE3541 | - | - | + | H | 1 | 2 | hypothetical protein | |
| 2123333..2123773 | + | 438 | 18314141 | - | PAE3542 | - | - | + | H | 2 | 2 | +GR 3.1 3.5 | hypothetical protein |
| 2163904..2164227 | - | 321 | 18314188 | - | PAE3605 | - | - | H | 1 | 2 | conserved within P. aerophilum | ||
| 2193352..2194353 | - | 999 | 18314219 | - | PAE3644 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 2196349..2196990 | + | 639 | 18314222 | - | PAE3647 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 2197261..2198082 | + | 819 | 18314223 | - | PAE3650 | - | - | + | H | 0 | 2 | +PT 4.1 3.6 | conserved protein |
| 2215195..2216106 | - | 909 | 18314241 | - | PAE3680 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 2216108..2216590 | - | 480 | 18314242 | - | PAE3682 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 2216649..2217491 | - | 840 | 18314243 | - | PAE3683 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 2217535..2218722 | + | 1185 | 18314244 | - | PAE3684 | - | - | + | H | 0 | 0 | conserved hypothetical protein |