Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Vibrio cholerae chromosome 2 (See the Abbreviations used):
Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
140631..140999 + 366 15600895 - VCA0124 - - H 2 2 hypothetical protein
167987..168493 + 504 15600920 - VCA0150 J COG0242 H 1 1 polypeptide deformylase
212001..212549 - 546 15600965 - VCA0195 - - - H 1 0 hypothetical protein
212665..213042 - 375 15600966 - VCA0196 - - - H 2 2 +CS 3.2 3.9 hypothetical protein
214574..215725 + 1149 15600968 - VCA0198 L COG0270 - H 1 0 site-specific DNA-methyltransferase, putative
215849..217765 + 1914 15600969 - VCA0199 - - - H 2 0 hypothetical protein
217758..218882 + 1122 15600970 - VCA0200 - - - H 2 0 hypothetical protein
218879..219757 + 876 15600971 - VCA0201 - - - H 2 0 hypothetical protein
219825..220262 - 435 15600972 - VCA0202 L COG1943 - H 1 0 IS1004 transposase
246827..247132 - 303 15600993 - VCA0224 - - H 2 2 hypothetical protein
261638..262522 - 882 15601009 - VCA0241 G COG3623 + H 1 0 hexulose-6-phosphate isomerase SgbU, putative
262534..263181 - 645 15601010 - VCA0242 G COG0269 + H 0 0 hexulose-6-phosphate synthase SgbH, putative
263187..264008 - 819 15601011 - VCA0243 R COG0561 + H 1 0 conserved hypothetical protein
264014..264706 - 690 15601012 - VCA0244 G COG0235 + H 1 0 sugar isomerase SgaE, AraD/FucA family
264715..265221 - 504 15601013 - VCA0245 G COG1762 + H 1 0 PTS system, IIA component
273253..275421 - 2166 15601022 - VCA0254 - - + H 0 0 hypothetical protein
275510..276340 - 828 15601023 - VCA0255 - - + H 2 0 hypothetical protein
276337..277008 - 669 15601024 - VCA0256 T COG0745 + H 1 0 transcriptional regulator
276984..278438 - 1452 15601025 - VCA0257 T COG0642 + H 1 0 sensor histidine kinase
278541..279053 - 510 15601026 - VCA0258 S COG3837 + H 1 1 +H 3.8 hypothetical protein
309750..310712 - 960 15601056 - VCA0291 L COG0582 - H 0 0 site-specific recombinase IntI4
311034..311300 + 264 15601057 - VCA0292 - - - H 2 2 hypothetical protein
311455..312054 + 597 15601058 - VCA0293 - - - H 1 0 hypothetical protein
312716..313090 + 372 15601059 - VCA0294 - - - H 1 2 hypothetical protein
313335..313523 + 186 15601060 - VCA0295 - - - H 0 2 +CFV 3.2 3.0 4.6 hypothetical protein
313804..313905 - 99 15601061 - VCA0296 - - - H 1 2 +NT 3.4 7.9 hypothetical protein
314325..314576 + 249 15601063 - VCA0298 - - - H 1 2 +R 4.2 hypothetical protein
314717..315160 + 441 15601064 - VCA0299 - - - H 1 0 hypothetical protein
315311..315940 + 627 15601065 - VCA0300 R COG0110 - H 1 0 chloramphenicol acetyltransferase
316096..316848 + 750 15601066 - VCA0301 Q COG1028 - H 1 0 oxidoreductase, short-chain dehydrogenase/reductase family
317510..317914 + 402 15601068 - VCA0303 - - - H 1 2 +S 3.7 hypothetical protein
318630..318746 - 114 15601070 - VCA0305 - - - H 1 2 +KST 3.8 4.6 3.2 hypothetical protein
318746..318928 + 180 15601071 - VCA0306 - - - H 0 2 +F 3.2 hypothetical protein
319123..319800 + 675 15601072 - VCA0307 - - - H 2 0 +K 3.1 hypothetical protein
319962..321170 + 1206 15601073 - VCA0308 F COG0232 - H 1 0 deoxyguanosinetriphosphate triphosphohydrolase-related protein
321332..322036 + 702 15601074 - VCA0309 L COG3183 - H 2 0 conserved hypothetical protein
322167..322532 + 363 15601075 - VCA0310 - - - H 1 1 +F 3.6 hypothetical protein
322686..323021 - 333 15601076 - VCA0311 N COG3668 - H 1 2 hypothetical protein
323022..323264 - 240 15601077 - VCA0312 - - - H 1 2 hypothetical protein
323508..323894 + 384 15601078 - VCA0313 L COG0494 - H 0 0 MutT/nudix family protein
324013..324294 + 279 15601079 - VCA0314 R COG3313 - H 2 2 +CS 8.5 3.1 hypothetical protein
324270..324428 - 156 15601080 - VCA0315 - - - H 0 2 +HK 5.2 3.1 hypothetical protein
324552..325088 + 534 15601081 - VCA0316 J COG1670 - H 0 0 acetyltransferase, putative
325225..325740 + 513 15601082 - VCA0317 M COG3040 - H 0 0 lipoprotein Blc
325890..326387 - 495 15601083 - VCA0318 K COG0454 - H 0 0 conserved hypothetical protein
326882..327046 - 162 15601085 - VCA0320 - - - H 2 2 +CV 3.9 -3.6 hypothetical protein
327161..327271 - 108 15601086 - VCA0321 - - - H 2 2 +IPT -3.2 3.0 8.7 hypothetical protein
327418..327870 + 450 15601087 - VCA0322 - - - H 2 0 +K 3.9 hypothetical protein
328018..328314 - 294 15601088 - VCA0323 S COG3041 - H 1 2 +K 3.4 conserved hypothetical protein
328799..329122 + 321 15601090 - VCA0325 - - - H 0 2 +C 7.2 hypothetical protein
329165..329266 - 99 15601091 - VCA0326 - - - H 2 2 +ALNV -3.3 6.4 7.3 -3.6 hypothetical protein
329859..330257 + 396 15601093 - VCA0328 E COG0346 - H 0 0 biphenyl-2,3-diol 1,2-dioxygenase III-related protein
330452..330703 + 249 15601094 - VCA0329 - - - H 1 2 +R 4.2 hypothetical protein
332490..332978 + 486 15601095 - VCA0330 O COG1764 - H 1 0 hypothetical protein
333106..333768 + 660 15601096 - VCA0331 - - - H 2 0 +Y 3.3 hypothetical protein
333953..334219 + 264 15601097 - VCA0332 S COG2929 - H 1 2 conserved hypothetical protein
334206..334451 + 243 15601098 - VCA0333 - - - H 0 2 +D 3.6 hypothetical protein
334535..335341 + 804 15601099 - VCA0334 - - - H 2 0 +N 4.7 hypothetical protein
335550..335651 - 99 15601100 - VCA0335 - - - H 1 2 +NT 3.4 7.9 hypothetical protein
336031..337035 + 1002 15601102 - VCA0337 S COG1619 - H 1 0 microcin immunity protein MccF
337188..337547 + 357 15601103 - VCA0338 R COG3324 - H 1 2 +F 4.2 conserved hypothetical protein
338321..338827 + 504 15601105 - VCA0340 - - - H 1 0 hypothetical protein
338972..339370 + 396 15601106 - VCA0341 E COG0346 - H 0 0 biphenyl-2,3-diol 1,2-dioxygenase III-related protein
339528..339830 + 300 15601107 - VCA0342 - - - H 1 2 hypothetical protein
340025..340276 + 249 15601108 - VCA0343 - - - H 1 2 +R 4.2 hypothetical protein
340545..340970 + 423 15601109 - VCA0344 - - - H 2 0 hypothetical protein
341170..341799 + 627 15601110 - VCA0345 S COG3506 - H 2 0 conserved hypothetical protein
342012..342491 + 477 15601111 - VCA0346 - - - H 1 0 H-REV 107-related protein
343243..343521 - 276 15601113 - VCA0348 N COG3668 - H 1 2 +I 3.1 conserved hypothetical protein
343997..344512 + 513 15601115 - VCA0350 M COG3040 - H 0 0 lipoprotein Blc
344577..345173 + 594 15601116 - VCA0351 - - - H 1 0 hypothetical protein
345481..345582 - 99 15601117 - VCA0352 - - - H 1 2 +NT 3.4 7.9 hypothetical protein
345853..346419 + 564 15601119 - VCA0354 S COG2320 - H 1 0 hypothetical protein
346568..347194 + 624 15601120 - VCA0355 E COG1280 - H 0 0 +S 3.4 conserved hypothetical protein
347308..348015 + 705 15601121 - VCA0356 - - - H 2 0 hypothetical protein
349629..349928 - 297 15601123 - VCA0359 N COG3668 - H 0 2 plasmid stabilization element ParE, putative
350396..350974 + 576 15601125 - VCA0361 - - - H 2 0 hypothetical protein
351512..352195 + 681 15601127 - VCA0363 - - - H 2 0 hypothetical protein
352409..352675 + 264 15601128 - VCA0364 - - - H 2 2 hypothetical protein
352830..353237 + 405 15601129 - VCA0365 - - - H 1 2 hypothetical protein
353709..354644 + 933 15601130 - VCA0366 - - - H 2 0 hypothetical protein
354862..355884 + 1020 15601131 - VCA0367 - - - H 2 0 hypothetical protein
355817..356431 + 612 15601132 - VCA0368 - - - H 2 0 hypothetical protein
356492..357187 - 693 15601133 - VCA0370 - - - H 1 0 hypothetical protein
356492..356866 - 372 15601134 - VCA0369 - - - H 1 2 hypothetical protein
357184..358056 - 870 15601135 - VCA0371 L COG2801 - H 0 0 transposase OrfAB, subunit B
358053..358397 - 342 15601136 - VCA0372 L COG2963 - H 0 1 transposase OrfAB, subunit A
358508..358618 + 108 15601137 - VCA0373 - - - H 2 2 +AET -3.3 5.9 -3.2 hypothetical protein
358749..359786 + 1035 15601138 - VCA0374 - - - H 2 0 hypothetical protein
359966..360289 + 321 15601139 - VCA0375 - - - H 0 2 +C 7.2 hypothetical protein
360542..360937 + 393 15601140 - VCA0376 - - - H 0 0 +F 3.1 hypothetical protein
361598..361993 + 393 15601142 - VCA0379 - - - H 0 0 +F 3.1 hypothetical protein
362068..362673 + 603 15601143 - VCA0380 S COG3575 - H 0 0 hypothetical protein
363345..363770 + 423 15601145 - VCA0382 K COG0454 - H 0 0 conserved hypothetical protein
364895..365005 - 108 15601146 - VCA0383 - - - H 2 2 +ST 3.6 5.3 hypothetical protein
365351..365686 - 333 15601148 - VCA0385 N COG3668 - H 1 2 conserved hypothetical protein
365687..365929 - 240 15601149 - VCA0386 - - - H 1 2 hypothetical protein
366171..366680 + 507 15601150 - VCA0387 M COG1247 - H 1 1 toxin resistance protein
366737..367390 + 651 15601151 - VCA0388 - - - H 2 0 hypothetical protein
369360..369713 + 351 15601154 - VCA0391 N COG3549 - H 2 0 killer protein, putative
369724..370041 + 315 15601155 - VCA0392 N COG3093 - H 1 2 antidote protein, putative
370413..370529 + 114 15601157 - VCA0394 - - - H 1 2 +CW 5.9 3.6 hypothetical protein
370629..371468 + 837 15601158 - VCA0395 R COG0384 - H 1 0 conserved hypothetical protein
372560..373042 + 480 15601160 - VCA0397 - - - H 1 1 hypothetical protein
373206..373373 + 165 15601161 - VCA0398 - - - H 1 2 +CIS 5.4 -3.2 -3.4 hypothetical protein
373489..374364 + 873 15601162 - VCA0399 - - - H 2 0 hypothetical protein
374494..374949 + 453 15601163 - VCA0400 K COG0454 - H 1 0 acetyltransferase, putative
375613..376131 + 516 15601165 - VCA0402 R COG0456 - H 0 2 acetyltransferase, putative
376324..376581 + 255 15601166 - VCA0403 - - - H 1 2 +FV 3.5 3.6 hypothetical protein
376904..377038 - 132 15601167 - VCA0404 - - - H 1 2 hypothetical protein
377315..377935 + 618 15601168 - VCA0405 - - - H 2 0 hypothetical protein
378083..378598 + 513 15601169 - VCA0406 M COG3040 - H 0 0 lipoprotein Blc
379262..379609 + 345 15601171 - VCA0408 - - - H 2 1 +I 4.1 hypothetical protein
379771..380229 + 456 15601172 - VCA0409 - - - H 2 0 hypothetical protein
380380..380742 + 360 15601173 - VCA0410 - - - H 1 2 +Y 6.7 hypothetical protein
380926..381066 - 138 15601174 - VCA0411 - - - H 0 2 +AEST -3.3 4.1 3.2 4.8 hypothetical protein
381045..381224 + 177 15601175 - VCA0412 - - - H 1 2 +CL 3.4 3.1 hypothetical protein
381420..382073 + 651 15601176 - VCA0413 - - - H 2 2 hypothetical protein
382198..382623 + 423 15601177 - VCA0414 - - - H 0 0 hypothetical protein
382786..383145 + 357 15601178 - VCA0415 R COG3324 - H 1 2 +F 4.2 conserved hypothetical protein
383328..383651 + 321 15601179 - VCA0416 - - - H 0 2 +C 8.1 hypothetical protein
383932..384468 + 534 15601180 - VCA0417 J COG1670 - H 0 0 acetyltransferase, putative
385530..386315 + 783 15601182 - VCA0419 - - - H 0 0 hypothetical protein
386384..386779 + 393 15601183 - VCA0420 - - - H 0 2 +C 4.4 hypothetical protein
387025..387450 + 423 15601184 - VCA0421 - - - H 1 1 hypothetical protein
388283..388729 + 444 15601187 - VCA0424 - - - H 0 2 +C 7.9 hypothetical protein
388985..389410 + 423 15601188 - VCA0425 - - - H 0 1 hypothetical protein
389588..389821 + 231 15601189 - VCA0426 R COG3313 - H 1 2 +C 9.3 conserved hypothetical protein
389797..389955 - 156 15601190 - VCA0427 - - - H 0 2 +HK 3.8 3.1 hypothetical protein
390185..390610 + 423 15601191 - VCA0428 - - - H 2 0 hypothetical protein
391166..391264 + 96 15601193 - VCA0430 - - - H 1 2 +IMSTV 5.0 3.1 4.5 -3.2 -3.6 hypothetical protein
391358..391753 + 393 15601194 - VCA0431 - - - H 0 2 +C 4.4 hypothetical protein
391927..392361 + 432 15601195 - VCA0432 E COG0346 - H 1 0 hypothetical protein
392515..393372 + 855 15601196 - VCA0433 - - - H 2 0 hypothetical protein
393549..393683 - 132 15601197 - VCA0434 - - - H 1 2 +EIS 3.4 -3.2 3.5 hypothetical protein
394041..394556 + 513 15601199 - VCA0436 K COG0454 - H 1 0 acetyltransferase, putative
394941..395057 + 114 15601201 - VCA0438 - - - H 1 2 +CW 5.9 3.6 hypothetical protein
395245..396249 + 1002 15601202 - VCA0439 S COG1619 - H 1 0 microcin immunity protein MccF
396402..396848 + 444 15601203 - VCA0440 - - - H 2 2 hypothetical protein
396968..397897 + 927 15601204 - VCA0441 - - - H 2 0 hypothetical protein
398032..398508 + 474 15601205 - VCA0442 J COG1670 - H 1 0 acetyltransferase, putative
398645..399160 + 513 15601206 - VCA0443 M COG3040 - H 0 0 lipoprotein Blc
400356..401048 + 690 15601210 - VCA0447 L COG0863 - H 2 0 haemagglutinin associated protein
401320..401745 + 423 15601211 - VCA0448 - - - H 2 0 hypothetical protein
402499..403029 + 528 15601212 - VCA0450 - - - H 2 1 hypothetical protein
403167..403667 + 498 15601213 - VCA0451 - - - H 2 0 hypothetical protein
403793..403903 + 108 15601214 - VCA0452 - - - H 2 2 +AIMV -3.3 -3.2 7.2 3.5 hypothetical protein
404320..404784 - 462 15601215 - VCA0453 - - - H 2 2 +KN 3.1 3.8 hypothetical protein
406385..406981 + 594 15601216 - VCA0455 R COG0693 - H 0 0 conserved hypothetical protein
407778..408392 + 612 15601218 - VCA0457 - - - H 2 1 hypothetical protein
408539..409396 + 855 15601219 - VCA0458 - - - H 2 0 hypothetical protein
409543..410103 + 558 15601220 - VCA0459 - - - H 1 0 +S 3.4 hypothetical protein
410246..410593 + 345 15601221 - VCA0460 - - - H 2 1 +I 4.1 hypothetical protein
410724..410849 + 123 15601222 - VCA0461 - - - H 2 2 +CT 3.3 -3.2 hypothetical protein
412362..412760 + 396 15601224 - VCA0463 E COG0346 - H 0 0 biphenyl-2,3-diol 1,2-dioxygenase III-related protein
412827..413204 + 375 15601225 - VCA0464 - - - H 1 2 +S 3.9 hypothetical protein
413348..413752 + 402 15601226 - VCA0465 - - - H 1 2 +S 3.7 hypothetical protein
414129..414287 - 156 15601227 - VCA0466 - - - H 0 2 +HK 5.2 3.1 hypothetical protein
414638..414796 - 156 15601228 - VCA0467 - - - H 0 2 +HK 5.2 3.1 hypothetical protein
414949..415281 + 330 15601229 - VCA0468 - - - H 0 2 hypothetical protein
415719..416153 + 432 15601231 - VCA0470 R COG0456 - H 0 1 acetyltransferase, putative
416321..416476 + 153 15601232 - VCA0471 - - - H 2 2 +IK 4.1 4.1 hypothetical protein
417604..417921 + 315 15601234 - VCA0473 R COG0110 - H 1 0 acetyltransferase, putative
418092..418784 + 690 15601235 - VCA0474 J COG1670 - H 1 0 acetyltransferase, putative
419979..420251 + 270 15601238 - VCA0477 - - - H 0 2 conserved hypothetical protein
420238..420528 + 288 15601239 - VCA0478 S COG2026 - H 0 2 +K 5.0 conserved hypothetical protein
420656..421111 + 453 15601240 - VCA0479 K COG0454 - H 1 0 acetyltransferase, putative
424892..425425 + 531 15601248 - VCA0487 K COG0454 - H 0 0 conserved hypothetical protein
426312..427325 + 1011 15601251 - VCA0490 I COG0657 - H 1 0 lipase, GDXG family
427398..427871 + 471 15601252 - VCA0491 - - - H 2 1 hypothetical protein
428335..428772 + 435 15601253 - VCA0493 L COG1943 - H 1 0 IS1004 transposase
428878..429054 + 174 15601254 - VCA0494 K COG0454 - H 1 2 +MY 3.6 3.9 hypothetical protein, interruption
429229..430101 + 870 15601255 - VCA0495 - - - H 1 0 hypothetical protein
430170..430850 + 678 15601256 - VCA0496 O COG0625 - H 0 0 glutathione S-transferase, putative
431036..431311 + 273 15601257 - VCA0497 - - - H 2 2 hypothetical protein
431305..431826 + 519 15601258 - VCA0498 - - - H 0 0 hypothetical protein
431958..432122 - 162 15601259 - VCA0499 - - - H 2 2 +CV 3.9 -3.6 hypothetical protein
432501..432896 + 393 15601261 - VCA0501 - - - H 1 2 hypothetical protein
569857..570582 + 723 15601392 - VCA0634 R COG2384 + H 0 0 conserved hypothetical protein
570592..571533 + 939 15601393 - VCA0635 K COG0583 + H 0 0 transcriptional regulator, LysR family
571530..571820 - 288 15601394 - VCA0636 S COG1359 + H 1 2 +EQ 3.3 3.3 conserved hypothetical protein
571824..572477 - 651 15601395 - VCA0637 C COG0778 + H 0 0 oxygen-insensitive NAD(P)H nitroreductase
572693..575896 - 3201 15601396 - VCA0638 Q COG0841 + H 0 0 transporter, AcrB/D/F family
575853..576857 - 1002 15601397 - VCA0639 Q COG0845 + H 1 0 AcrA/AcrE family protein
735771..736643 - 870 15601546 - VCA0791 L COG2801 - H 0 0 transposase OrfAB, subunit B
736640..736984 - 342 15601547 - VCA0792 L COG2963 - H 0 1 transposase OrfAB, subunit A
737061..737543 + 480 15601548 - VCA0793 - - - H 0 1 hypothetical protein
737544..737837 + 291 15601549 - VCA0794 - - - H 0 2 +K 4.9 hypothetical protein
738052..739008 + 954 15601550 - VCA0795 L COG1961 - H 1 0 resolvase, putative
739095..739193 + 96 15601551 - VCA0796 - - - H 2 2 +IK -3.2 7.9 hypothetical protein
829467..830411 + 942 15601631 - VCA0876 K COG0583 - H 2 0 D-serine deaminase activator
832585..832740 - 153 15601634 - VCA0879 - - - H 2 2 +ITY 3.0 5.2 4.8 hypothetical protein
832685..833065 + 378 15601635 - VCA0880 - - - H 1 2 hypothetical protein
833090..833485 + 393 15601636 - VCA0881 - - - H 1 0 hypothetical protein
833497..834561 + 1062 15601637 - VCA0882 - - - H 1 0 hypothetical protein
834574..835683 + 1107 15601638 - VCA0883 - - - H 0 0 hypothetical protein
835734..836795 + 1059 15601639 - VCA0884 - - - H 1 0 +Q 3.5 hypothetical protein
949658..951517 + 1857 15601749 - VCA0996 Q COG1132 + H 1 0 ABC transporter, ATP-binding protein
951648..952373 + 723 15601750 - VCA0997 - - + H 1 0 hypothetical protein
952463..953506 - 1041 15601751 - VCA0998 C COG1902 + H 0 0 NADH-dependent flavin oxidoreductase, Oye family
953656..954231 + 573 15601752 - VCA0999 K COG1309 + H 0 0 transcriptional regulator, TetR family
954303..954932 - 627 15601753 - VCA1000 E COG1280 + H 1 0 +L 3.3 conserved hypothetical protein
955133..955966 + 831 15601754 - VCA1001 K COG2207 + H 1 0 transcriptional regulator, AraC/XylS family
993043..993444 - 399 15601793 - VCA1042 S COG1664 H 1 2 Ccm2-related protein

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