Thermotoga maritima: 1858 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Thermotoga maritima genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 52.1 | 34.3 | 52.3 | 46.3 |
st. dev. | 4.2 | 4.0 | 6.1 | 3.1 |
skewness | -0.5 | 0.0 | -0.6 | -0.9 |
kurtosis | 3.7 | 3.4 | 4.7 | 5.3 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 5.8 | 2.2 | M | 2.3 | 1.1 |
C | 0.7 | 0.9 | N | 3.5 | 1.3 |
D | 4.9 | 1.6 | P | 3.9 | 1.4 |
E | 8.9 | 3.1 | Q | 1.9 | 1.1 |
F | 5.2 | 2.2 | R | 5.6 | 2.0 |
G | 6.9 | 2.1 | S | 5.6 | 1.9 |
H | 1.6 | 1.0 | T | 4.5 | 1.5 |
I | 7.2 | 1.9 | V | 8.8 | 2.1 |
K | 7.7 | 2.3 | W | 1.1 | 0.9 |
L | 10.1 | 2.6 | Y | 3.5 | 1.4 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 14.3 | 8.7 | CAT (H) | 5.4 | 5.3 | CCT (P) | 9.9 | 6.5 | AGT (S) | 8.0 | 5.9 |
GCC (A) | 14.2 | 8.8 | CAC (H) | 10.5 | 7.8 | CCC (P) | 10.3 | 6.6 | AGC (S) | 8.8 | 6.2 |
GCG (A) | 15.3 | 9.2 | ATT (I) | 14.1 | 8.9 | CCG (P) | 9.5 | 6.5 | ACT (T) | 7.4 | 5.7 |
GCA (A) | 14.3 | 8.7 | ATC (I) | 30.1 | 12.6 | CCA (P) | 9.5 | 6.5 | ACC (T) | 12.2 | 7.6 |
TGT (C) | 4.3 | 5.8 | ATA (I) | 28.0 | 12.0 | CAG (Q) | 14.6 | 9.3 | ACG (T) | 12.4 | 7.4 |
TGC (C) | 3.1 | 4.6 | AAG (K) | 34.1 | 14.4 | CAA (Q) | 4.7 | 5.4 | ACA (T) | 12.7 | 7.6 |
GAT (D) | 27.6 | 11.7 | AAA (K) | 42.9 | 16.2 | CGT (R) | 3.0 | 3.8 | GTT (V) | 27.3 | 11.1 |
GAC (D) | 20.9 | 10.7 | TTG (L) | 13.0 | 8.5 | CGC (R) | 2.2 | 3.2 | GTC (V) | 16.1 | 8.3 |
GAG (E) | 32.7 | 14.9 | TTA (L) | 3.5 | 5.3 | CGG (R) | 1.8 | 2.8 | GTG (V) | 34.4 | 13.5 |
GAA (E) | 56.2 | 22.5 | CTT (L) | 24.1 | 12.0 | CGA (R) | 3.1 | 3.9 | GTA (V) | 9.9 | 7.0 |
TTT (F) | 19.6 | 13.5 | CTC (L) | 32.8 | 13.1 | AGG (R) | 16.0 | 9.1 | TGG (W) | 10.7 | 9.3 |
TTC (F) | 32.5 | 14.5 | CTG (L) | 25.1 | 11.3 | AGA (R) | 29.5 | 12.9 | TAT (Y) | 9.6 | 7.2 |
GGT (G) | 19.4 | 9.8 | CTA (L) | 2.7 | 3.6 | TCT (S) | 12.4 | 8.0 | TAC (Y) | 25.1 | 11.6 |
GGC (G) | 8.2 | 5.9 | ATG (M) | 23.3 | 10.9 | TCC (S) | 11.7 | 7.3 | TGA (.) | 2.7 | 2.4 |
GGG (G) | 9.1 | 6.7 | AAT (N) | 10.5 | 8.0 | TCG (S) | 7.8 | 5.9 | TAG (.) | 0.4 | 1.3 |
GGA (G) | 32.4 | 13.0 | AAC (N) | 24.4 | 10.9 | TCA (S) | 7.1 | 5.7 | TAA (.) | 0.8 | 1.8 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 0.99 | 0.63 | CAT (H) | 0.62 | 0.58 | CCT (P) | 1.01 | 0.71 | AGT (S) | 0.87 | 0.71 |
GCC (A) | 0.96 | 0.58 | CAC (H) | 1.19 | 0.67 | CCC (P) | 1.03 | 0.71 | AGC (S) | 0.97 | 0.80 |
GCG (A) | 1.03 | 0.59 | ATT (I) | 0.58 | 0.36 | CCG (P) | 0.95 | 0.68 | ACT (T) | 0.68 | 0.60 |
GCA (A) | 0.99 | 0.59 | ATC (I) | 1.26 | 0.49 | CCA (P) | 0.96 | 0.70 | ACC (T) | 1.06 | 0.66 |
TGT (C) | 0.86 | 0.81 | ATA (I) | 1.14 | 0.44 | CAG (Q) | 1.44 | 0.59 | ACG (T) | 1.10 | 0.69 |
TGC (C) | 0.61 | 0.73 | AAG (K) | 0.89 | 0.30 | CAA (Q) | 0.47 | 0.51 | ACA (T) | 1.13 | 0.69 |
GAT (D) | 1.14 | 0.40 | AAA (K) | 1.11 | 0.30 | CGT (R) | 0.31 | 0.43 | GTT (V) | 1.26 | 0.52 |
GAC (D) | 0.83 | 0.39 | TTG (L) | 0.76 | 0.52 | CGC (R) | 0.23 | 0.36 | GTC (V) | 0.72 | 0.41 |
GAG (E) | 0.74 | 0.28 | TTA (L) | 0.21 | 0.35 | CGG (R) | 0.21 | 0.41 | GTG (V) | 1.55 | 0.56 |
GAA (E) | 1.25 | 0.29 | CTT (L) | 1.40 | 0.63 | CGA (R) | 0.33 | 0.48 | GTA (V) | 0.46 | 0.36 |
TTT (F) | 0.72 | 0.39 | CTC (L) | 1.98 | 0.84 | AGG (R) | 1.71 | 0.92 | TGG (W) | - | - |
TTC (F) | 1.26 | 0.41 | CTG (L) | 1.48 | 0.65 | AGA (R) | 3.18 | 1.06 | TAT (Y) | 0.55 | 0.42 |
GGT (G) | 1.11 | 0.55 | CTA (L) | 0.16 | 0.27 | TCT (S) | 1.30 | 0.85 | TAC (Y) | 1.42 | 0.45 |
GGC (G) | 0.49 | 0.43 | ATG (M) | - | - | TCC (S) | 1.27 | 0.84 | TGA (.) | - | - |
GGG (G) | 0.53 | 0.42 | AAT (N) | 0.60 | 0.43 | TCG (S) | 0.82 | 0.69 | TAG (.) | - | - |
GGA (G) | 1.85 | 0.61 | AAC (N) | 1.38 | 0.45 | TCA (S) | 0.76 | 0.68 | TAA (.) | - | - |