Sulfolobus tokodaii: 2826 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Sulfolobus tokodaii genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 42.3 | 32.4 | 25.2 | 33.3 |
st. dev. | 5.5 | 5.6 | 7.6 | 4.0 |
skewness | -0.2 | 0.6 | 1.9 | 1.4 |
kurtosis | 4.6 | 5.4 | 7.9 | 11.5 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 5.4 | 2.4 | M | 2.1 | 1.1 |
C | 0.8 | 1.0 | N | 4.9 | 2.0 |
D | 4.6 | 2.0 | P | 3.8 | 1.8 |
E | 7.2 | 3.1 | Q | 2.0 | 1.4 |
F | 4.6 | 2.2 | R | 4.2 | 2.0 |
G | 6.0 | 2.3 | S | 6.7 | 2.8 |
H | 1.3 | 1.0 | T | 4.6 | 1.9 |
I | 10.1 | 3.0 | V | 7.2 | 2.2 |
K | 8.3 | 3.1 | W | 1.0 | 0.9 |
L | 10.4 | 3.0 | Y | 4.8 | 1.9 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 24.6 | 13.6 | CAT (H) | 9.6 | 7.8 | CCT (P) | 14.0 | 9.1 | AGT (S) | 16.5 | 9.7 |
GCC (A) | 5.1 | 5.3 | CAC (H) | 3.5 | 4.8 | CCC (P) | 4.1 | 5.3 | AGC (S) | 5.7 | 5.5 |
GCG (A) | 3.8 | 4.5 | ATT (I) | 40.7 | 17.1 | CCG (P) | 3.3 | 4.7 | ACT (T) | 21.2 | 11.3 |
GCA (A) | 20.0 | 12.7 | ATC (I) | 9.3 | 7.6 | CCA (P) | 16.0 | 11.0 | ACC (T) | 4.5 | 5.4 |
TGT (C) | 5.5 | 7.8 | ATA (I) | 50.3 | 20.0 | CAG (Q) | 5.0 | 5.5 | ACG (T) | 4.0 | 4.8 |
TGC (C) | 2.2 | 4.5 | AAG (K) | 29.0 | 17.4 | CAA (Q) | 15.3 | 11.3 | ACA (T) | 16.4 | 11.1 |
GAT (D) | 36.5 | 17.6 | AAA (K) | 54.0 | 24.6 | CGT (R) | 1.5 | 3.2 | GTT (V) | 28.8 | 13.8 |
GAC (D) | 9.4 | 7.8 | TTG (L) | 10.3 | 8.3 | CGC (R) | 0.5 | 2.2 | GTC (V) | 5.5 | 5.4 |
GAG (E) | 23.5 | 15.3 | TTA (L) | 47.9 | 17.9 | CGG (R) | 0.4 | 2.3 | GTG (V) | 8.7 | 7.5 |
GAA (E) | 48.0 | 23.8 | CTT (L) | 19.3 | 11.7 | CGA (R) | 1.0 | 2.6 | GTA (V) | 28.8 | 13.5 |
TTT (F) | 31.9 | 16.5 | CTC (L) | 5.9 | 7.1 | AGG (R) | 12.1 | 12.6 | TGG (W) | 9.6 | 8.5 |
TTC (F) | 13.6 | 10.9 | CTG (L) | 3.9 | 5.1 | AGA (R) | 26.2 | 14.6 | TAT (Y) | 35.3 | 15.5 |
GGT (G) | 22.4 | 13.1 | CTA (L) | 16.7 | 10.4 | TCT (S) | 19.3 | 13.7 | TAC (Y) | 12.5 | 9.8 |
GGC (G) | 5.3 | 5.2 | ATG (M) | 20.9 | 10.8 | TCC (S) | 5.1 | 6.7 | TGA (.) | 1.3 | 2.4 |
GGG (G) | 7.2 | 7.1 | AAT (N) | 34.8 | 16.9 | TCG (S) | 3.3 | 4.3 | TAG (.) | 0.8 | 2.1 |
GGA (G) | 25.2 | 14.0 | AAC (N) | 13.5 | 9.9 | TCA (S) | 16.8 | 11.2 | TAA (.) | 2.5 | 2.9 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 1.80 | 0.82 | CAT (H) | 1.27 | 0.76 | CCT (P) | 1.48 | 0.92 | AGT (S) | 1.56 | 0.94 |
GCC (A) | 0.39 | 0.49 | CAC (H) | 0.46 | 0.59 | CCC (P) | 0.45 | 0.62 | AGC (S) | 0.55 | 0.62 |
GCG (A) | 0.30 | 0.45 | ATT (I) | 1.21 | 0.42 | CCG (P) | 0.34 | 0.51 | ACT (T) | 1.81 | 0.86 |
GCA (A) | 1.46 | 0.78 | ATC (I) | 0.30 | 0.28 | CCA (P) | 1.64 | 0.97 | ACC (T) | 0.40 | 0.53 |
TGT (C) | 0.89 | 0.88 | ATA (I) | 1.49 | 0.45 | CAG (Q) | 0.47 | 0.51 | ACG (T) | 0.35 | 0.47 |
TGC (C) | 0.34 | 0.59 | AAG (K) | 0.70 | 0.36 | CAA (Q) | 1.40 | 0.62 | ACA (T) | 1.38 | 0.82 |
GAT (D) | 1.53 | 0.45 | AAA (K) | 1.29 | 0.36 | CGT (R) | 0.24 | 0.55 | GTT (V) | 1.58 | 0.65 |
GAC (D) | 0.43 | 0.39 | TTG (L) | 0.60 | 0.50 | CGC (R) | 0.09 | 0.41 | GTC (V) | 0.32 | 0.37 |
GAG (E) | 0.65 | 0.38 | TTA (L) | 2.77 | 0.90 | CGG (R) | 0.06 | 0.28 | GTG (V) | 0.50 | 0.45 |
GAA (E) | 1.32 | 0.40 | CTT (L) | 1.10 | 0.62 | CGA (R) | 0.15 | 0.43 | GTA (V) | 1.59 | 0.66 |
TTT (F) | 1.39 | 0.45 | CTC (L) | 0.35 | 0.42 | AGG (R) | 1.59 | 1.29 | TGG (W) | - | - |
TTC (F) | 0.58 | 0.42 | CTG (L) | 0.23 | 0.34 | AGA (R) | 3.79 | 1.55 | TAT (Y) | 1.47 | 0.41 |
GGT (G) | 1.44 | 0.76 | CTA (L) | 0.96 | 0.58 | TCT (S) | 1.67 | 0.91 | TAC (Y) | 0.51 | 0.39 |
GGC (G) | 0.37 | 0.46 | ATG (M) | - | - | TCC (S) | 0.44 | 0.53 | TGA (.) | - | - |
GGG (G) | 0.51 | 0.56 | AAT (N) | 1.43 | 0.42 | TCG (S) | 0.30 | 0.42 | TAG (.) | - | - |
GGA (G) | 1.65 | 0.81 | AAC (N) | 0.56 | 0.40 | TCA (S) | 1.48 | 0.86 | TAA (.) | - | - |