| Coordinates | Strand | Length | PID | Gene name | Synonym | FunctionCode | COG | GCRegion | HGT | SimGC | SimMah | Dev.AA | Function |
| 32162..32449 | + | 285 | 16759022 | - | STY0034 | - | - | - | H | 2 | 2 | putative membrane protein | |
| 32549..32998 | - | 447 | 16759023 | - | STY0035 | - | - | - | H | 2 | 1 | +I 3.3 | putative membrane protein |
| 33368..34363 | + | 993 | 16759024 | - | STY0036 | K | COG0583 | - | H | 2 | 0 | putative transcriptional regulator (lysR family) | |
| 34511..34816 | - | 303 | 16759025 | - | STY0038 | T | COG0745 | - | H | 2 | 2 | putative transcriptional regulator | |
| 35339..37057 | + | 1716 | 16759026 | - | STY0039 | - | - | - | H | 0 | 0 | possible sulfatase | |
| 37103..38674 | - | 1569 | 16759027 | - | STY0040 | F | COG0737 | - | H | 0 | 0 | putative secreted 5'-nucleotidase | |
| 38773..39534 | - | 759 | 16759028 | - | STY0041 | - | - | - | H | 1 | 0 | +NY 3.6 3.2 | putative exported protein |
| 118231..118650 | + | 417 | 16759095 | - | STY0117 | - | - | H | 1 | 2 | hypothetical protein | ||
| 198171..198518 | - | 345 | 16759163 | yacC | STY0189 | - | - | H | 1 | 1 | conserved hypothetical protein | ||
| 222159..222689 | - | 528 | 16759187 | ligT | STY0213 | J | COG1514 | + | H | 1 | 1 | 2'-5' RNA ligase | |
| 222750..225191 | + | 2439 | 16759188 | hrpB | STY0214 | L | COG1643 | + | H | 0 | 0 | ATP-dependent helicase HrpB | |
| 225332..227854 | + | 2520 | 16759189 | mrcB | STY0215 | M | COG0744 | + | H | 0 | 0 | penicillin-binding protein 1b; peptidoglycan synthetase | |
| 230387..231184 | + | 795 | 16759190 | fhuC | STY0219 | P | COG1120 | + | H | 1 | 0 | ferrichrome transport ATP-binding protein FhuC | |
| 231184..232074 | + | 888 | 16759191 | fhuD | STY0220 | P | COG0614 | + | H | 0 | 0 | ferrichrome-binding periplasmic protein precursor | |
| 232071..234128 | + | 2055 | 16759192 | fhuB | STY0221 | P | COG0609 | + | H | 1 | 0 | ferrichrome transport protein FhuB precursor | |
| 234219..235499 | - | 1278 | 16759193 | hemL | STY0223 | H | COG0001 | + | H | 0 | 0 | glutamate-1-semialdehyde 2,1-aminomutase | |
| 235669..237090 | + | 1419 | 16759194 | yadQ | STY0225 | P | COG0038 | + | H | 0 | 0 | putative membrane protein | |
| 302488..303120 | - | 630 | 16759251 | - | STY0286 | - | - | + | H | 1 | 2 | +P 4.7 | hypothetical protein |
| 303120..303542 | - | 420 | 16759252 | - | STY0287 | - | - | + | H | 1 | 1 | hypothetical protein | |
| 303553..304548 | - | 993 | 16759253 | - | STY0288 | S | COG3520 | + | H | 0 | 0 | hypothetical protein | |
| 304545..306428 | - | 1881 | 16759254 | - | STY0289 | S | COG3519 | + | H | 0 | 0 | hypothetical protein | |
| 306935..307759 | - | 822 | 16759256 | - | STY0291 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 314246..314647 | + | 399 | 16759263 | - | STY0300 | - | - | H | 2 | 2 | hypothetical protein | ||
| 319019..319768 | + | 747 | 16759269 | - | STY0306 | - | - | - | H | 2 | 0 | putative membrane protein | |
| 319800..320294 | + | 492 | 16759270 | - | STY0307 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 325202..325672 | + | 468 | 16759272 | - | STY0311 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 325657..326130 | + | 471 | 16759273 | - | STY0312 | - | - | - | H | 2 | 0 | probable secreted protein | |
| 326234..326704 | + | 468 | 16759274 | - | STY0313 | P | COG0659 | - | H | 1 | 2 | hypothetical protein | |
| 326689..327150 | + | 459 | 16759275 | - | STY0314 | - | - | - | H | 2 | 2 | probable secreted protein | |
| 327278..327694 | + | 414 | 16759276 | - | STY0316 | - | - | - | H | 0 | 2 | probable secreted protein | |
| 327721..328158 | + | 435 | 16759277 | - | STY0317 | - | - | - | H | 0 | 2 | hypothetical protein | |
| 328166..328273 | + | 105 | 16759278 | - | STY0318 | - | - | - | H | 2 | 2 | +AMNV -3.5 7.3 4.8 3.5 | hypothetical protein |
| 341669..342163 | + | 492 | 16759288 | safA | STY0332 | - | - | H | 2 | 1 | probable lipoprotein | ||
| 348682..349626 | + | 942 | 16759293 | sinR | STY0341 | K | COG0583 | - | H | 2 | 0 | LysR-family transcriptional regulator SinR | |
| 349746..349859 | + | 111 | 16759294 | - | STY0342 | - | - | - | H | 0 | 2 | +MPST 4.5 4.0 -3.1 3.1 | hypothetical protein |
| 351764..352474 | + | 708 | 16759295 | tcfA | STY0345 | - | - | - | H | 1 | 0 | putative fimbrial protein | |
| 352525..353100 | + | 573 | 16759296 | tcfB | STY0346 | - | - | - | H | 0 | 0 | putative fimbrial subunit | |
| 355919..356998 | + | 1077 | 16759298 | tcfD | STY0348 | - | - | - | H | 1 | 0 | putative fimbrail protein | |
| 357131..357586 | + | 453 | 16759299 | tinR | STY0349 | K | COG1522 | - | H | 2 | 0 | transcriptional regulator | |
| 357726..358343 | + | 615 | 16759300 | - | STY0350 | - | - | - | H | 2 | 0 | +F 3.5 | hypothetical protein |
| 359306..360025 | - | 717 | 16759301 | - | STY0351 | M | COG3637 | - | H | 1 | 0 | possible outer membrane adhesin | |
| 378398..378796 | + | 396 | 16759318 | - | STY0368 | - | - | - | H | 2 | 2 | +N 5.8 | probable secreted protein |
| 378844..379602 | - | 756 | 16759319 | stbE | STY0369 | N | COG3121 | - | H | 1 | 0 | fimbrial chaperone protein | |
| 379568..380893 | - | 1323 | 16759320 | stbD | STY0370 | - | - | - | H | 0 | 0 | putative fimbrial protein | |
| 383443..384204 | - | 759 | 16759322 | stbB | STY0372 | N | COG3121 | - | H | 1 | 0 | fimbrial chaperone protein | |
| 384266..384802 | - | 534 | 16759323 | stbA | STY0373 | N | COG3539 | - | H | 1 | 2 | +T 4.0 | probable fimbrial protein |
| 385465..386199 | + | 732 | 16759324 | - | STY0374 | - | - | - | H | 2 | 0 | possible transmembrane regulator | |
| 386344..386673 | + | 327 | 16759325 | - | STY0375 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 386985..388559 | + | 1572 | 16759326 | - | STY0376 | T | COG2200 | - | H | 0 | 0 | putative rtn protein | |
| 388659..389402 | + | 741 | 16759327 | - | STY0377 | - | - | - | H | 2 | 0 | possible transmembrane regulator | |
| 389375..389923 | + | 546 | 16759328 | - | STY0378 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 390264..390788 | + | 522 | 16759329 | - | STY0380 | - | - | - | H | 2 | 0 | +FS 3.1 3.1 | possible outer membrane protein |
| 391048..391575 | + | 525 | 16759330 | - | STY0381 | T | COG2197 | - | H | 2 | 2 | possible transcriptionl regulator | |
| 391586..391810 | + | 222 | 16759331 | - | STY0382 | - | - | - | H | 2 | 2 | +GI -3.2 4.9 | probable secreted protein |
| 391868..392227 | + | 357 | 16759332 | - | STY0383 | - | - | - | H | 1 | 2 | probable lipoprotein | |
| 393222..393377 | - | 153 | 16759334 | - | STY0386 | - | - | - | H | 2 | 2 | +IKY 3.7 3.4 4.8 | hypothetical protein |
| 507385..507843 | + | 456 | 16759438 | tnpA | STY0500 | L | COG1943 | H | 1 | 1 | transposase for insertion sequence element IS200 | ||
| 520263..520814 | - | 549 | 16759452 | maA | STY0515 | R | COG0110 | - | H | 0 | 1 | maltose O-acetyltransferase | |
| 520993..521211 | - | 216 | 16759453 | hha | STY0516 | - | - | - | H | 2 | 2 | +G -3.2 | haemolysin expression modulating protein |
| 521239..521613 | - | 372 | 16759454 | ybaJ | STY0517 | - | - | - | H | 2 | 2 | +N 3.7 | conserved hypothetical protein |
| 559663..560349 | + | 684 | 16759485 | ybbA | STY0553 | R | COG1136 | H | 1 | 2 | hypothetical ABC transporter ATP-binding protein | ||
| 602214..602846 | - | 630 | 16759521 | fimZ | STY0596 | T | COG2197 | - | H | 2 | 0 | probable transcriptional regulator (FimXZ protein) | |
| 603450..604172 | - | 720 | 16759522 | fimY | STY0598 | - | - | - | H | 0 | 0 | fimbriae Y protein | |
| 604191..604502 | - | 309 | 16759523 | - | STY0599 | T | COG2200 | - | H | 1 | 2 | hypothetical protein | |
| 604664..605260 | - | 594 | 16759524 | fimW | STY0600 | - | - | - | H | 2 | 0 | +H 3.3 | fimbriae w protein |
| 606760..608400 | - | 1638 | 16759525 | - | STY0605 | - | - | - | H | 2 | 1 | putative membrane protein | |
| 608393..609319 | - | 924 | 16759526 | gtrB | STY0606 | M | COG0463 | - | H | 1 | 0 | bactoprenol glucosyl transferase | |
| 609316..609678 | - | 360 | 16759527 | gtrA | STY0607 | S | COG2246 | - | H | 1 | 2 | +F 4.6 | bactoprenol-linked glucose translocase |
| 610081..610326 | - | 243 | 16759528 | - | STY0609 | - | - | - | H | 0 | 2 | +HLM 5.0 -3.1 4.9 | possible copper-binding protein |
| 629581..633465 | + | 3882 | 16759548 | entF | STY0631 | Q | COG1020 | + | H | 0 | 0 | enterobactin synthetase component F | |
| 635695..636684 | - | 987 | 16759550 | fepG | STY0635 | P | COG0609 | + | H | 0 | 0 | ferric enterobactin transport protein FepG | |
| 636684..637691 | - | 1005 | 16759551 | fepD | STY0636 | P | COG0609 | + | H | 1 | 0 | ferric enterobactin transport protein FepD | |
| 637802..639046 | + | 1242 | 16759552 | ybdA | STY0637 | G | COG0477 | + | H | 0 | 0 | hypothetical membrane protein p43 | |
| 639109..640065 | - | 954 | 16759553 | fepB | STY0638 | P | COG0614 | + | H | 0 | 0 | ferrienterobactin-binding periplasmic protein precursor | |
| 640379..641548 | + | 1167 | 16759554 | entC | STY0639 | H | COG1169 | + | H | 0 | 0 | isochorismate synthase EntC | |
| 641555..643168 | + | 1611 | 16759555 | entE | STY0640 | Q | COG1021 | + | H | 0 | 0 | 2,3-dihydroxybenzoate-AMP ligase | |
| 643182..644039 | + | 855 | 16759556 | entB | STY0641 | Q | COG1535 | + | H | 0 | 0 | isochorismatase | |
| 644039..644794 | + | 753 | 16759557 | entA | STY0642 | Q | COG1028 | + | H | 0 | 0 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |
| 644797..645210 | + | 411 | 16759558 | ybdB | STY0643 | Q | COG2050 | + | H | 0 | 0 | conserved hypothetical protein | |
| 645392..647497 | + | 2103 | 16759559 | cstA | STY0644 | T | COG1966 | + | H | 0 | 0 | carbon starvation protein A | |
| 667277..668173 | - | 894 | 16759579 | citG | STY0668 | H | COG1767 | + | H | 0 | 0 | CitG protein | |
| 668145..668564 | - | 417 | 16759580 | citX | STY0669 | H | COG3697 | + | H | 1 | 1 | conserved hypothetical protein | |
| 668594..670123 | - | 1527 | 16759581 | citF | STY0670 | C | COG3051 | + | H | 0 | 0 | citrate lyase alpha chain | |
| 670133..671041 | - | 906 | 16759582 | citE | STY0671 | G | COG2301 | + | H | 1 | 0 | citrate lyase beta chain | |
| 671038..671334 | - | 294 | 16759583 | citD | STY0672 | C | COG3052 | + | H | 0 | 2 | citrate lyase acyl carrier protein | |
| 759249..760343 | + | 1092 | 16759661 | - | STY0759 | M | COG0562 | - | H | 2 | 0 | UDP-galactopyranose mutase | |
| 760426..761319 | + | 891 | 16759662 | - | STY0760 | R | COG1216 | - | H | 2 | 0 | putative glycosyl transferase | |
| 761332..762465 | + | 1131 | 16759663 | - | STY0761 | M | COG0438 | - | H | 2 | 0 | galactosyltransferase | |
| 763368..764078 | + | 708 | 16759664 | - | STY0764 | G | COG1134 | - | H | 2 | 0 | putative polysaccharide export ABC transporter ATP-binding protein | |
| 766138..766971 | + | 831 | 16759665 | - | STY0767 | M | COG0463 | - | H | 2 | 1 | +N 4.0 | conserved hypothetical protein |
| 816437..817660 | + | 1221 | 16759712 | hutI | STY0820 | Q | COG1228 | + | H | 0 | 0 | imidazolonepropionase | |
| 817657..818598 | + | 939 | 16759713 | hutG | STY0821 | E | COG0010 | + | H | 1 | 0 | formiminoglutamase | |
| 818643..819368 | + | 723 | 16759714 | hutC | STY0822 | K | COG2188 | + | H | 0 | 0 | histidine utilization repressor | |
| 819564..821249 | + | 1683 | 16759715 | hutU | STY0823 | E | COG2987 | + | H | 0 | 0 | urocanate hydratase | |
| 821251..822771 | + | 1518 | 16759716 | hutH | STY0824 | E | COG2986 | + | H | 0 | 0 | histidine ammonia-lyase | |
| 822856..823332 | - | 474 | 16759717 | ybhB | STY0825 | R | COG1881 | + | H | 0 | 0 | conserved hypothetical protein | |
| 823390..824679 | - | 1287 | 16759718 | bioA | STY0826 | H | COG0161 | + | H | 0 | 0 | adenosylmethionine-8-amino-7-oxononanoate aminotransferase | |
| 825803..826960 | + | 1155 | 16759720 | bioF | STY0828 | H | COG0156 | + | H | 0 | 0 | 8-amino-7-oxononanoate synthase | |
| 826944..827699 | + | 753 | 16759721 | bioC | STY0829 | Q | COG0500 | + | H | 0 | 0 | biotin synthesis protein BioC | |
| 827692..828378 | + | 684 | 16759722 | bioD | STY0830 | H | COG0132 | + | H | 0 | 0 | dethiobiotin synthetase | |
| 829029..831050 | + | 2019 | 16759723 | uvrB | STY0831 | L | COG0556 | + | H | 0 | 0 | excision nuclease ABC subunit B | |
| 910323..910643 | + | 318 | 16759795 | - | STY0918 | G | COG3414 | H | 2 | 2 | putative phosphotransferase enzyme II, B component | ||
| 937244..937621 | - | 375 | 16759820 | - | STY0946 | L | COG0582 | H | 1 | 2 | probable integrase remnant | ||
| 1014982..1015386 | - | 402 | 16759882 | - | STY1020 | K | COG1396 | H | 1 | 2 | putative DNA-binding protein | ||
| 1019934..1020200 | + | 264 | 16759890 | - | STY1028 | - | - | - | H | 0 | 2 | putative bacteriophage protein | |
| 1020282..1020443 | + | 159 | 16759891 | - | STY1029 | - | - | - | H | 1 | 2 | putative bacteriophage protein | |
| 1020578..1020865 | + | 285 | 16759892 | - | STY1030 | - | - | - | H | 1 | 2 | putative bacteriophage protein | |
| 1020876..1021373 | + | 495 | 16759893 | - | STY1031 | N | COG3654 | - | H | 0 | 0 | putative bacteriophage protein | |
| 1021558..1021797 | + | 237 | 16759894 | - | STY1032 | - | - | - | H | 1 | 2 | putative damage-inducible protein | |
| 1021787..1022092 | + | 303 | 16759895 | - | STY1033 | - | - | - | H | 1 | 2 | putative bacteriophage protein | |
| 1023687..1024484 | + | 795 | 16759898 | - | STY1036 | O | COG0484 | - | H | 1 | 0 | putative prophage antitermination protein | |
| 1024883..1025008 | + | 123 | 16759899 | - | STY1038 | - | - | - | H | 1 | 2 | +HMS 5.9 5.9 6.1 | putative bacteriophage protein |
| 1025810..1026199 | + | 387 | 16759901 | - | STY1040 | - | - | H | 1 | 2 | putative prophage membrane protein | ||
| 1045023..1045451 | + | 426 | 16759928 | - | STY1067 | - | - | H | 1 | 2 | putative bacteriophage protein | ||
| 1045516..1046268 | + | 750 | 16759929 | - | STY1068 | - | - | - | H | 0 | 0 | putative bacteriophage protein | |
| 1046621..1047820 | + | 1197 | 16759931 | - | STY1070 | - | - | - | H | 0 | 0 | putative bacteriophage protein | |
| 1047817..1048497 | + | 678 | 16759932 | - | STY1071 | - | - | - | H | 0 | 1 | putative bacteriophage protein | |
| 1048497..1050008 | + | 1509 | 16759933 | - | STY1072 | - | - | - | H | 1 | 0 | hypothetical prophage protein | |
| 1050023..1050541 | + | 516 | 16759934 | - | STY1073 | - | - | - | H | 0 | 1 | hypothetical prophage protein | |
| 1051463..1052164 | - | 699 | 16759936 | - | STY1076 | - | - | - | H | 2 | 2 | +N 3.3 | conserved hypothetical protein |
| 1052477..1052755 | - | 276 | 16759937 | - | STY1077 | - | - | - | H | 0 | 2 | conserved hypothetical protein | |
| 1085337..1085795 | + | 456 | 16759967 | tnpA | STY1114 | L | COG1943 | - | H | 1 | 0 | transposase for insertion sequence element is200 | |
| 1086003..1086683 | - | 678 | 16759968 | pipA | STY1115 | - | - | - | H | 1 | 1 | conserved hypothetical protein | |
| 1086906..1087781 | - | 873 | 16759969 | pipB | STY1117 | S | COG1357 | - | H | 2 | 2 | +N 3.5 | conserved hypothetical protein |
| 1088329..1088670 | - | 339 | 16759970 | sigE | STY1120 | - | - | - | H | 1 | 2 | cell invasion protein | |
| 1088687..1090372 | - | 1683 | 16759971 | sigD | STY1121 | - | - | - | H | 0 | 0 | cell invasion protein | |
| 1090704..1090874 | + | 168 | 16759972 | - | STY1124 | - | - | - | H | 1 | 2 | +K 4.5 | conserved hypothetical protein |
| 1090875..1090985 | - | 108 | 16759973 | - | STY1125 | - | - | - | H | 1 | 2 | +GKT -3.2 3.1 3.3 | hypothetical protein |
| 1091094..1092563 | - | 1467 | 16759974 | pipD | STY1126 | - | - | - | H | 0 | 0 | putative secreted peptidase | |
| 1126533..1127390 | - | 855 | 16760005 | - | STY1164 | E | COG0591 | - | H | 1 | 0 | putative membrane transporter | |
| 1127503..1128030 | - | 525 | 16760006 | - | STY1165 | E | COG0591 | - | H | 1 | 1 | +F 4.1 | putative membrane transporter |
| 1129554..1130708 | + | 1152 | 16760008 | - | STY1167 | S | COG3055 | - | H | 2 | 0 | conserved hypothetical protein | |
| 1130754..1131446 | + | 690 | 16760009 | - | STY1168 | - | - | - | H | 2 | 1 | +Y 4.6 | putative secreted protein |
| 1131729..1133009 | + | 1278 | 16760010 | - | STY1169 | G | COG0477 | - | H | 1 | 0 | +F 3.4 | putative transporter |
| 1133023..1134126 | + | 1101 | 16760011 | - | STY1170 | R | COG0673 | - | H | 1 | 0 | putative oxidoreductase | |
| 1138300..1139133 | - | 831 | 16760016 | csgG | STY1176 | M | COG1462 | - | H | 0 | 0 | assembly/transport component in curli production | |
| 1139160..1139576 | - | 414 | 16760017 | csgF | STY1177 | - | - | - | H | 1 | 2 | +N 4.5 | assembly/transport component in curli production |
| 1139603..1139998 | - | 393 | 16760018 | csgE | STY1178 | - | - | - | H | 1 | 2 | assembly/transport component in curli production | |
| 1140027..1140653 | - | 624 | 16760019 | csgD | STY1179 | T | COG2197 | - | H | 2 | 0 | putative regulatory protein | |
| 1141409..1141864 | + | 453 | 16760020 | csgB | STY1180 | - | - | - | H | 1 | 0 | +N 3.9 | nucleation component of curlin monomers |
| 1141906..1142361 | + | 453 | 16760021 | csgA | STY1181 | - | - | - | H | 0 | 2 | +GN 3.3 4.7 | major curlin subunit precursor |
| 1142423..1142749 | + | 324 | 16760022 | - | STY1182 | - | - | - | H | 1 | 2 | +QS 4.5 3.4 | conserved hypothetical protein |
| 1142881..1143201 | + | 318 | 16760023 | - | STY1183 | - | - | - | H | 0 | 2 | +I 3.0 | conserved hypothetical protein |
| 1319577..1319921 | + | 342 | 16760186 | - | STY1358 | L | COG0582 | H | 1 | 2 | integrase (fragment) | ||
| 1343304..1343540 | + | 234 | 16760214 | - | STY1391 | - | - | - | H | 1 | 2 | +T 7.9 | putative lipoprotein |
| 1343754..1345052 | - | 1296 | 16760215 | - | STY1392 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 1345254..1346105 | - | 849 | 16760216 | - | STY1393 | K | COG2207 | - | H | 2 | 0 | putative transcriptional regulator | |
| 1346408..1347253 | + | 843 | 16760217 | - | STY1394 | - | - | - | H | 0 | 0 | +T 3.2 | putative lipoprotein |
| 1347328..1349310 | + | 1980 | 16760218 | - | STY1395 | - | - | - | H | 0 | 0 | invasin-like protein | |
| 1349331..1350164 | + | 831 | 16760219 | - | STY1396 | - | - | - | H | 2 | 0 | putative exported protein | |
| 1350263..1350820 | + | 555 | 16760220 | - | STY1397 | O | COG2077 | - | H | 1 | 0 | putative thiol peroxidase | |
| 1350926..1351264 | - | 336 | 16760221 | - | STY1398 | R | COG2329 | - | H | 1 | 2 | +Y 3.6 | hypothetical protein |
| 1383466..1383870 | + | 402 | 16760248 | - | STY1431 | C | COG3038 | - | H | 0 | 2 | +M 5.2 | putative cytochrome |
| 1384141..1384578 | - | 435 | 16760249 | - | STY1433 | Q | COG0500 | - | H | 0 | 2 | conserved hypothetical protein | |
| 1385267..1386817 | - | 1548 | 16760250 | - | STY1434 | - | - | - | H | 1 | 0 | putative membrane protein | |
| 1386954..1387634 | - | 678 | 16760251 | - | STY1435 | E | COG0765 | - | H | 1 | 0 | putative amino acid ABC transporter | |
| 1387631..1388362 | - | 729 | 16760252 | - | STY1436 | E | COG1126 | - | H | 1 | 0 | ABC transporter ATP-binding subunit | |
| 1388387..1389034 | - | 645 | 16760253 | - | STY1437 | E | COG0765 | - | H | 1 | 0 | putative ABC amino acid transporter permease | |
| 1389041..1389802 | - | 759 | 16760254 | - | STY1438 | E | COG0834 | - | H | 2 | 0 | putative periplasmic amino acid-binding protein | |
| 1390720..1391064 | + | 342 | 16760255 | - | STY1439 | S | COG3326 | - | H | 1 | 1 | putative membrane protein | |
| 1391185..1391325 | - | 138 | 16760256 | sseJ | STY1439a | - | - | - | H | 2 | 2 | +H 6.7 | secreted effector J (pseudogene) |
| 1414042..1414440 | + | 396 | 16760279 | ugtL | STY1463 | - | - | H | 2 | 2 | putative membrane protein | ||
| 1457501..1457830 | + | 327 | 16760313 | - | STY1501 | - | - | H | 1 | 2 | putative secreted protein | ||
| 1472365..1473606 | + | 1239 | 16760323 | - | STY1517 | G | COG0477 | - | H | 0 | 0 | +I 3.3 | putative multidrug efflux protein |
| 1473676..1475232 | + | 1554 | 16760324 | pqaA | STY1518 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 1475409..1476695 | + | 1284 | 16760325 | - | STY1519 | G | COG0477 | - | H | 1 | 0 | membrane transport protein | |
| 1476670..1477695 | + | 1023 | 16760326 | - | STY1520 | E | COG1063 | - | H | 0 | 0 | putative alcohol dehydrogenase | |
| 1477754..1478545 | - | 789 | 16760327 | - | STY1521 | K | COG2186 | - | H | 0 | 0 | putative regulatory protein | |
| 1478591..1479682 | - | 1089 | 16760328 | - | STY1522 | M | COG3049 | - | H | 1 | 0 | putative secreted hydrolase | |
| 1480110..1481213 | + | 1101 | 16760329 | hyaA2 | STY1523 | C | COG1740 | - | H | 0 | 0 | uptake hydrogenase small subunit | |
| 1494880..1495314 | + | 432 | 16760344 | marA | STY1541 | K | COG2207 | H | 1 | 2 | multiple antibiotic resistance protein MarA | ||
| 1541402..1541704 | - | 300 | 16760393 | - | STY1598 | - | - | H | 1 | 2 | hypothetical protein | ||
| 1549534..1549845 | + | 309 | 16760407 | - | STY1613 | - | - | + | H | 0 | 2 | hypothetical protein | |
| 1549845..1550390 | + | 543 | 16760408 | - | STY1614 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 1550387..1551982 | + | 1593 | 16760409 | - | STY1615 | - | - | + | H | 0 | 0 | conserved hypothetical protein | |
| 1551982..1553478 | + | 1494 | 16760410 | - | STY1616 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 1553459..1554280 | + | 819 | 16760411 | - | STY1617 | S | COG2369 | + | H | 0 | 0 | hypothetical protein | |
| 1554283..1554741 | + | 456 | 16760412 | - | STY1618 | - | - | + | H | 1 | 1 | putative bacteriophage protein | |
| 1554956..1556071 | + | 1113 | 16760413 | - | STY1619 | - | - | + | H | 1 | 0 | hypothetical protein | |
| 1556086..1557039 | + | 951 | 16760414 | - | STY1620 | - | - | + | H | 0 | 0 | hypothetical protein | |
| 1557389..1557835 | + | 444 | 16760416 | - | STY1622 | - | - | + | H | 0 | 2 | conserved bacteriophage hypothetical protein | |
| 1557835..1558299 | + | 462 | 16760417 | - | STY1623 | - | - | + | H | 1 | 0 | hypothetical protein | |
| 1558296..1558550 | + | 252 | 16760418 | - | STY1624 | - | - | + | H | 0 | 2 | +PS 3.2 4.0 | hypothetical protein |
| 1566665..1567012 | + | 345 | 16760428 | - | STY1634 | R | COG3628 | H | 1 | 2 | putative bacteriophage baseplate protein | ||
| 1569707..1570219 | + | 510 | 16760432 | - | STY1638 | - | - | - | H | 1 | 2 | +G 3.3 | alternative bacteriophage tail fiber C-terminus |
| 1570843..1571328 | - | 483 | 16760434 | - | STY1640 | - | - | - | H | 1 | 2 | alternative bacteriophage tail fiber C-terminus | |
| 1571330..1571800 | - | 468 | 16760435 | - | STY1641 | - | - | - | H | 1 | 2 | alternative bacteriophage tail fiber C-terminus | |
| 1571802..1572284 | - | 480 | 16760436 | - | STY1642 | - | - | - | H | 1 | 2 | alternative bacteriophage tail fiber C-terminus | |
| 1572347..1572919 | + | 570 | 16760437 | - | STY1643 | L | COG1961 | - | H | 1 | 2 | DNA-invertase | |
| 1591701..1592141 | + | 438 | 16760453 | - | STY1662 | - | - | H | 1 | 1 | putative membrane protein | ||
| 1625241..1626299 | - | 1056 | 16760489 | ssaU | STY1698 | N | COG1377 | - | H | 2 | 0 | putative type III secretion protein | |
| 1626296..1627075 | - | 777 | 16760490 | ssaT | STY1699 | N | COG1684 | - | H | 2 | 0 | putative type III secretion protein | |
| 1627076..1627342 | - | 264 | 16760491 | ssaS | STY1700 | N | COG1987 | - | H | 2 | 2 | putative type III secretion protein | |
| 1627339..1627986 | - | 645 | 16760492 | yscR | STY1701 | N | COG1338 | - | H | 1 | 0 | putative type III secretion protein | |
| 1628054..1629022 | - | 966 | 16760493 | ssaQ | STY1702 | N | COG1886 | - | H | 1 | 0 | putative type III secretion protein | |
| 1629003..1629377 | - | 372 | 16760494 | ssaP | STY1703 | - | - | - | H | 1 | 1 | putative type III secretion protein | |
| 1629358..1629735 | - | 375 | 16760495 | ssaO | STY1704 | - | - | - | H | 1 | 2 | +Q 6.5 | putative type III secretion protein |
| 1631029..1633074 | - | 2043 | 16760497 | ssaV | STY1706 | N | COG1298 | - | H | 0 | 0 | putative type III secretion protein | |
| 1633059..1633427 | - | 366 | 16760498 | ssaM | STY1707 | - | - | - | H | 2 | 2 | +V -3.0 | putative pathogenicity island protein |
| 1633485..1634477 | - | 990 | 16760499 | ssaL | STY1708 | - | - | - | H | 0 | 0 | putative secretion system protein | |
| 1634467..1635141 | - | 672 | 16760500 | - | STY1709 | - | - | - | H | 1 | 0 | putative pathogenicity island protein | |
| 1635138..1635686 | - | 546 | 16760501 | - | STY1710 | - | - | - | H | 1 | 2 | putative pathogenicity island protein | |
| 1635704..1636453 | - | 747 | 16760502 | ssaJ | STY1711 | N | COG1766 | - | H | 1 | 0 | putative pathogenicity island lipoprotein | |
| 1636450..1636698 | - | 246 | 16760503 | ssaI | STY1712 | - | - | - | H | 2 | 2 | +S 4.1 | putative pathogenicity island protein |
| 1636710..1636937 | - | 225 | 16760504 | ssaH | STY1713 | - | - | - | H | 1 | 2 | +L 3.0 | putative pathogenicity island protein |
| 1636978..1637193 | - | 213 | 16760505 | ssaG | STY1714 | - | - | - | H | 2 | 2 | +IM 3.2 5.9 | putative pathogenicity island protein |
| 1637287..1637976 | - | 687 | 16760506 | sseG | STY1715 | - | - | - | H | 1 | 2 | putative pathogenicity island effector protein | |
| 1637973..1638755 | - | 780 | 16760507 | sseF | STY1716 | - | - | - | H | 1 | 2 | putative pathogenicity island effector protein | |
| 1638771..1639205 | - | 432 | 16760508 | sscB | STY1717 | R | COG0457 | - | H | 0 | 1 | +M 4.1 | putative pathogenicity island protein |
| 1639257..1639673 | - | 414 | 16760509 | sseE | STY1718 | - | - | - | H | 1 | 2 | putative pathogenicity island effector protein | |
| 1639676..1640263 | - | 585 | 16760510 | sseD | STY1719 | - | - | - | H | 0 | 2 | putative pathogenicity island effector protein | |
| 1640279..1641733 | - | 1452 | 16760511 | sseC | STY1720 | - | - | - | H | 1 | 0 | putative pathogenicity island effector protein | |
| 1642206..1642796 | - | 588 | 16760513 | sseB | STY1722 | - | - | - | H | 1 | 0 | putative pathogenicity island effector effector protein | |
| 1642803..1643129 | - | 324 | 16760514 | sseA | STY1723 | D | COG1196 | - | H | 2 | 2 | +K 4.3 | putative pathogenicity island protein |
| 1643332..1643574 | - | 240 | 16760515 | ssaE | STY1724 | - | - | - | H | 1 | 2 | +Q 3.6 | putative secretion system protein |
| 1643582..1644793 | - | 1209 | 16760516 | ssaD | STY1725 | - | - | - | H | 1 | 0 | putative pathogenicity island protein | |
| 1644774..1646267 | - | 1491 | 16760517 | spiA | STY1726 | N | COG1450 | - | H | 2 | 0 | putative outer membrane secretory protein | |
| 1646269..1646652 | - | 381 | 16760518 | spiC | STY1727 | - | - | - | H | 2 | 1 | putative pathogenicity island 2 secreted effector protein | |
| 1647071..1649833 | + | 2760 | 16760519 | ssrA | STY1728 | T | COG0642 | - | H | 2 | 0 | putative two-component sensor kinase | |
| 1649864..1650502 | + | 636 | 16760520 | ssrB | STY1729 | T | COG2197 | - | H | 2 | 2 | putative two-component response regulator | |
| 1704154..1704468 | - | 312 | 16760565 | - | STY1782 | - | - | H | 2 | 2 | putative membrane protein | ||
| 1721127..1721447 | - | 318 | 16760583 | celA | STY1801 | G | COG1440 | H | 1 | 2 | PTS system, cellobiose-specific IIB component | ||
| 1732384..1732800 | + | 414 | 16760594 | - | STY1813 | L | COG0494 | H | 1 | 2 | putative MutT-family protein | ||
| 1762007..1762189 | - | 180 | 16760622 | - | STY1849 | - | - | - | H | 0 | 2 | +TV 5.5 5.4 | conserved hypothetical protein |
| 1762727..1763365 | - | 636 | 16760624 | - | STY1851 | E | COG1280 | - | H | 0 | 1 | +F 3.3 | putative membrane transport protein |
| 1763561..1764106 | - | 543 | 16760625 | aroQ | STY1852 | E | COG1605 | - | H | 0 | 0 | putative chorismate mutase | |
| 1764189..1764344 | + | 153 | 16760626 | - | STY1853 | - | - | - | H | 2 | 2 | +GKSTY -3.2 3.4 4.3 -3.1 3.4 | hypothetical protein |
| 1764423..1764671 | + | 246 | 16760627 | - | STY1854 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 1764926..1765774 | - | 846 | 16760628 | - | STY1855 | K | COG0789 | - | H | 1 | 0 | putative transcriptional regulator | |
| 1765843..1766436 | - | 591 | 16760629 | - | STY1856 | T | COG2197 | - | H | 2 | 2 | putative regulatory protein | |
| 1767478..1768128 | - | 648 | 16760631 | - | STY1858 | R | COG3443 | - | H | 0 | 1 | conserved hypothetical protein | |
| 1768322..1768648 | - | 324 | 16760632 | - | STY1859 | C | COG1145 | - | H | 0 | 2 | +CGT 15.1 -3.2 -3.1 | conserved hypothetical protein |
| 1768842..1769975 | + | 1131 | 16760633 | - | STY1860 | M | COG0668 | - | H | 0 | 0 | putative membrane protein | |
| 1778004..1778474 | - | 468 | 16760643 | - | STY1871 | O | COG0071 | - | H | 1 | 0 | putative heat shock protein | |
| 1779096..1779221 | - | 123 | 16760645 | - | STY1874 | - | - | - | H | 2 | 2 | +W 5.2 | putative lipoprotein |
| 1779297..1779386 | - | 87 | 16760646 | - | STY1874a | - | - | - | H | 2 | 2 | +CTY 5.2 4.8 5.2 | hypothetical protein |
| 1779441..1779530 | - | 87 | 16760647 | - | STY1874b | - | - | - | H | 2 | 2 | +CG 5.2 -3.2 | hypothetical protein |
| 1779602..1779943 | + | 339 | 16760648 | - | STY1875 | - | - | - | H | 2 | 2 | putative secreted protein | |
| 1780271..1780444 | - | 171 | 16760649 | - | STY1876 | - | - | - | H | 1 | 2 | +MN 3.6 3.2 | hypothetical protein |
| 1780996..1781166 | + | 168 | 16760650 | - | STY1877 | - | - | - | H | 0 | 2 | +Y 4.2 | hypothetical protein |
| 1781177..1781734 | - | 555 | 16760651 | pagC | STY1878 | - | - | - | H | 2 | 2 | +S 3.6 | outer membrane invasion protein |
| 1782112..1782240 | - | 126 | 16760652 | - | STY1879 | - | - | - | H | 1 | 2 | +CM 5.4 5.6 | hypothetical protein |
| 1782326..1782490 | - | 162 | 16760653 | - | STY1880 | - | - | - | H | 2 | 2 | +FN 6.4 3.5 | hypothetical protein |
| 1782539..1782802 | + | 261 | 16760654 | pagD | STY1880a | - | - | - | H | 2 | 2 | +S 4.3 | putative outer membrane virulence protein |
| 1782934..1783146 | + | 210 | 16760655 | cspH | STY1881 | K | COG1278 | - | H | 1 | 2 | putative cold shock protein | |
| 1783564..1784085 | + | 519 | 16760656 | envE | STY1882 | - | - | - | H | 1 | 0 | +C 3.7 | putative lipoprotein |
| 1785388..1786197 | + | 807 | 16760658 | cdtB | STY1886 | - | - | - | H | 1 | 0 | putative toxin-like protein | |
| 1786270..1786647 | + | 375 | 16760659 | - | STY1887 | - | - | - | H | 2 | 2 | +Y 3.5 | hypothetical protein |
| 1786795..1787337 | - | 540 | 16760660 | - | STY1889 | - | - | - | H | 1 | 0 | conserved hypothetical protein | |
| 1787529..1788257 | - | 726 | 16760661 | - | STY1890 | - | - | - | H | 2 | 0 | +SY 3.6 3.2 | putative pertussis-like toxin subunit |
| 1788274..1788687 | - | 411 | 16760662 | - | STY1891 | - | - | - | H | 2 | 2 | +SY 3.2 3.1 | putative pertussis-like toxin subunit |
| 1789728..1790852 | - | 1122 | 16760663 | - | STY1893 | - | - | - | H | 2 | 0 | putative bacteriophage protein | |
| 1791357..1791815 | - | 456 | 16760664 | tnpA | STY1895 | L | COG1943 | - | H | 1 | 0 | transposase for insertion sequence element IS200 | |
| 1875015..1875410 | + | 393 | 16760743 | - | STY1988 | - | - | - | H | 2 | 0 | +N 3.4 | conserved hypothetical protein |
| 1875739..1876215 | + | 474 | 16760744 | - | STY1990 | - | - | - | H | 0 | 1 | hypothetical protein | |
| 1876603..1877022 | - | 417 | 16760745 | - | STY1991 | K | COG0454 | - | H | 1 | 2 | putative acetyltransferase | |
| 1877393..1877659 | + | 264 | 16760746 | - | STY1993 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 1877792..1877968 | + | 174 | 16760747 | - | STY1994 | - | - | - | H | 2 | 2 | +MQT 3.4 4.0 3.8 | hypothetical protein |
| 1881004..1881918 | + | 912 | 16760748 | - | STY2000 | G | COG0697 | - | H | 2 | 0 | putative membrane protein | |
| 1882051..1882209 | + | 156 | 16760749 | - | STY2001 | - | - | - | H | 2 | 2 | +FM 3.4 4.1 | hypothetical protein |
| 1882219..1882833 | + | 612 | 16760750 | - | STY2002 | - | - | - | H | 1 | 1 | putative membrane protein | |
| 1883033..1883224 | + | 189 | 16760751 | - | STY2003 | - | - | - | H | 2 | 2 | +HK 6.9 3.1 | hypothetical protein |
| 1883242..1885221 | - | 1977 | 16760752 | yjcS | STY2004 | Q | COG2015 | - | H | 0 | 0 | putative hydrolase | |
| 1885617..1886747 | + | 1128 | 16760753 | - | STY2005 | T | COG2199 | - | H | 0 | 0 | conserved hypothetical protein | |
| 1886884..1887057 | + | 171 | 16760754 | - | STY2006 | - | - | - | H | 1 | 2 | +C 5.3 | hypothetical protein |
| 1887201..1887428 | - | 225 | 16760755 | - | STY2007 | - | - | - | H | 0 | 2 | putative DNA-binding protein | |
| 1889471..1889989 | - | 516 | 16760756 | - | STY2013 | - | - | - | H | 0 | 1 | putative bacteriophage tail protein | |
| 1890004..1891515 | - | 1509 | 16760757 | - | STY2014 | - | - | - | H | 1 | 0 | putative bacteriophage tail protein | |
| 1891515..1892195 | - | 678 | 16760758 | - | STY2015 | - | - | - | H | 0 | 1 | putative bacteriophage protein | |
| 1892192..1893391 | - | 1197 | 16760759 | - | STY2016 | - | - | - | H | 0 | 0 | +T 3.4 | putative bacteriophage protein |
| 1893761..1893898 | - | 135 | 16760761 | - | STY2018 | - | - | - | H | 1 | 2 | +FTW 4.3 -3.1 6.6 | putative bacteriophage protein |
| 1894800..1895228 | - | 426 | 16760763 | - | STY2020 | - | - | - | H | 2 | 2 | putative bacteriophage protein | |
| 1895228..1895959 | - | 729 | 16760764 | - | STY2021 | R | COG0457 | - | H | 1 | 1 | putative bacteriophage protein | |
| 1896154..1896489 | - | 333 | 16760765 | - | STY2022 | - | - | - | H | 1 | 2 | putative exported protein | |
| 1896486..1897517 | - | 1029 | 16760766 | - | STY2023 | - | - | - | H | 0 | 0 | putative bacteriophage protein | |
| 1917993..1919201 | - | 1206 | 16760800 | - | STY2056 | - | - | - | H | 1 | 2 | putative transposase | |
| 1919308..1920240 | + | 930 | 16760801 | - | STY2057 | - | - | - | H | 2 | 1 | +K 3.5 | hypothetical protein |
| 1920237..1920791 | + | 552 | 16760802 | - | STY2058 | - | - | - | H | 2 | 2 | +I 4.2 | putative membrane protein |
| 1920890..1921297 | - | 405 | 16760803 | - | STY2059 | - | - | - | H | 1 | 2 | putative bacteriophage protein | |
| 1921304..1921726 | - | 420 | 16760804 | - | STY2060 | - | - | - | H | 1 | 0 | hypothetical protein | |
| 1924564..1924806 | - | 240 | 16760809 | - | STY2065 | K | COG1396 | - | H | 1 | 2 | putative cro repressor | |
| 1924903..1925322 | + | 417 | 16760810 | - | STY2066 | K | COG1396 | - | H | 1 | 2 | +E 3.5 | putative regulator |
| 1925628..1925783 | + | 153 | 16760811 | - | STY2067 | - | - | - | H | 1 | 2 | +T 4.7 | conserved hypothetical protein |
| 1925965..1926261 | - | 294 | 16760813 | - | STY2069 | - | - | - | H | 1 | 2 | +Y 5.8 | hypothetical protein |
| 1926656..1926877 | + | 219 | 16760814 | kil | STY2070 | - | - | - | H | 1 | 2 | putative cell division inhibitor protein | |
| 1926877..1927047 | + | 168 | 16760815 | - | STY2071 | - | - | - | H | 2 | 2 | +CKM 5.4 4.5 3.7 | putative bacteriophage protein |
| 1927122..1927397 | + | 273 | 16760816 | racC | STY2072 | - | - | - | H | 2 | 2 | +KT 3.5 3.2 | putative bacteriophage protein |
| 1931753..1931947 | + | 192 | 16760819 | lar | STY20074a | - | - | - | H | 2 | 2 | +CL 6.1 -3.0 | restriction alleviation and modification enhancement protein |
| 1931940..1932128 | + | 186 | 16760820 | - | STY2075 | - | - | - | H | 2 | 2 | +K 6.1 | conserved hypothetical protein |
| 1932235..1932516 | + | 279 | 16760821 | - | STY2076 | - | - | - | H | 1 | 2 | +P 3.3 | putative excisionase |
| 1932482..1933558 | + | 1074 | 16760822 | - | STY2077 | L | COG0582 | - | H | 2 | 2 | putative integrase | |
| 1933756..1933872 | - | 114 | 16760823 | - | STY2078 | - | - | - | H | 2 | 2 | +NV 5.9 -3.4 | hypothetical protein |
| 1956684..1957358 | - | 672 | 16760846 | - | STY2104 | - | - | H | 2 | 1 | putative membrane protein | ||
| 1996817..1996933 | - | 114 | 16760886 | - | STY2147 | - | - | - | H | 2 | 2 | +F 3.9 | hypothetical protein |
| 1996951..1997142 | - | 189 | 16760887 | - | STY2148 | - | - | - | H | 2 | 2 | +K 4.5 | hypothetical protein |
| 1997355..1998788 | - | 1431 | 16760888 | - | STY2149 | M | COG0791 | - | H | 0 | 0 | putative exported protein | |
| 1999008..1999208 | - | 198 | 16760889 | - | STY2151 | - | - | - | H | 2 | 2 | +Y 5.3 | hypothetical protein |
| 1999201..1999338 | - | 135 | 16760890 | - | STY2152 | - | - | - | H | 2 | 2 | +F 4.3 | hypothetical protein |
| 2028567..2028944 | + | 375 | 16760922 | fliO | STY2186 | N | COG3190 | H | 1 | 2 | flagellar protein FliO | ||
| 2046987..2047163 | - | 174 | 16760943 | - | STY2209 | - | - | - | H | 1 | 2 | +V 3.2 | hypothetical protein |
| 2047166..2047339 | - | 171 | 16760944 | - | STY2210 | - | - | - | H | 0 | 2 | hypothetical protein | |
| 2049539..2049700 | + | 159 | 16760946 | - | STY2212 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 2049689..2050015 | - | 324 | 16760947 | - | STY2213 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 2050009..2050395 | - | 384 | 16760948 | - | STY2214 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 2050392..2050472 | - | 78 | 16760949 | - | STY2215 | - | - | - | H | 2 | 2 | +TY 3.5 3.3 | hypothetical protein |
| 2052806..2052976 | - | 168 | 16760951 | - | STY2217 | - | - | - | H | 1 | 2 | +PS 3.9 3.6 | hypothetical protein |
| 2079449..2079799 | + | 348 | 16760977 | pduH | STY2249 | - | - | + | H | 0 | 2 | +H 3.6 | PduH protein |
| 2080580..2081212 | + | 630 | 16760980 | pduL | STY2252 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 2081209..2081700 | + | 489 | 16760981 | pduM | STY2253 | - | - | + | H | 1 | 0 | conserved hypothetical protein | |
| 2081988..2082998 | + | 1008 | 16760982 | pduO | STY2255 | S | COG2096 | + | H | 1 | 0 | conserved hypothetical protein | |
| 2084401..2085513 | + | 1110 | 16760984 | pduQ | STY2257 | C | COG1454 | + | H | 0 | 0 | putative propanol dehydrogenase | |
| 2085537..2086865 | + | 1326 | 16760985 | pduS | STY2258 | C | COG1726 | + | H | 1 | 0 | putative ferredoxin | |
| 2086868..2087422 | + | 552 | 16760986 | pduT | STY2259 | - | - | + | H | 0 | 1 | putative propanediol utilization protein PduT | |
| 2114739..2115905 | - | 1164 | 16761011 | ugd | STY2289 | M | COG1004 | - | H | 1 | 0 | UDP-glucose 6-dehydrogenase | |
| 2117712..2119142 | - | 1428 | 16761013 | rfbP | STY2291 | M | COG2148 | - | H | 2 | 0 | undecaprenyl-phosphate galactosephosphotransferase | |
| 2119214..2120647 | - | 1431 | 16761014 | rfbK | STY2292 | G | COG1109 | - | H | 2 | 0 | phosphomannomutase | |
| 2120634..2122073 | - | 1437 | 16761015 | rfbM2 | STY2293 | M | COG0836 | - | H | 2 | 0 | mannose-1-phosphate guanylyltransferase | |
| 2122074..2123018 | - | 942 | 16761016 | rfbN | STY2294 | M | COG0463 | - | H | 2 | 0 | putative rhamnosyltransferase | |
| 2123019..2124080 | - | 1059 | 16761017 | rfbU | STY2295 | M | COG0438 | - | H | 2 | 0 | putative glycosyltransferase | |
| 2124655..2125656 | - | 999 | 16761018 | rfbV | STY2296 | M | COG0463 | - | H | 2 | 0 | putative glycosyltransferase | |
| 2125658..2126956 | - | 1296 | 16761019 | rfbX | STY2297 | - | - | - | H | 2 | 2 | +I 3.2 | putative O-antigen transporter |
| 2127027..2128043 | - | 1014 | 16761020 | rfbE | STY2298 | M | COG0451 | - | H | 2 | 1 | CDP-tyvelose-2-epimerase | |
| 2128040..2128879 | - | 837 | 16761021 | rfbS | STY2299 | M | COG0451 | - | H | 2 | 0 | paratose synthase | |
| 2128914..2130227 | - | 1311 | 16761022 | rfbH | STY2300 | M | COG0399 | - | H | 1 | 0 | putative dehydratase RfbH | |
| 2130254..2131333 | - | 1077 | 16761023 | rfbG | STY2301 | M | COG0451 | - | H | 1 | 0 | CDP-glucose 4,6-dehydratase | |
| 2131338..2132111 | - | 771 | 16761024 | rfbF | STY2302 | M | COG1208 | - | H | 1 | 0 | glucose-1-phosphate cytidylyltransferase | |
| 2132127..2133101 | - | 972 | 16761025 | rfbI | STY2303 | C | COG2871 | - | H | 2 | 0 | putative reductase RfbI | |
| 2133107..2133658 | - | 549 | 16761026 | rfbC | STY2304 | M | COG1898 | - | H | 2 | 1 | dTDP-4-dehydrorhamnose 3,5-epimerase | |
| 2133659..2134537 | - | 876 | 16761027 | rfbA | STY2305 | M | COG1209 | - | H | 1 | 0 | TDP-glucose pyrophosphorylase | |
| 2134585..2135484 | - | 897 | 16761028 | rfbD | STY2306 | M | COG1091 | - | H | 0 | 0 | dTDP-4-dehydrorhamnose reductase | |
| 2135484..2136569 | - | 1083 | 16761029 | rfbB | STY2307 | M | COG1088 | - | H | 1 | 0 | dTDP-glucose 4,6-dehydratase | |
| 2188394..2189107 | - | 711 | 16761066 | - | STY2350 | - | - | - | H | 2 | 0 | +Y 3.3 | putative exported protein |
| 2189209..2189652 | - | 441 | 16761067 | - | STY2351 | - | - | - | H | 2 | 2 | +D 3.0 | putative exported protein |
| 2189768..2190217 | - | 447 | 16761068 | - | STY2352 | - | - | - | H | 2 | 1 | +N 3.6 | hypothetical protein |
| 2190285..2190764 | - | 477 | 16761069 | - | STY2353 | - | - | - | H | 2 | 2 | +Y 3.2 | putative exported protein |
| 2190874..2191476 | - | 600 | 16761070 | - | STY2355 | - | - | - | H | 2 | 0 | putative exported protein | |
| 2191545..2191823 | - | 276 | 16761071 | - | STY2356 | - | - | - | H | 2 | 2 | +DN 3.0 3.1 | hypothetical protein |
| 2191793..2192488 | - | 693 | 16761072 | - | STY2357 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 2192559..2193059 | - | 498 | 16761073 | - | STY2358 | - | - | - | H | 2 | 2 | conserved hypothetical protein | |
| 2193190..2193492 | - | 300 | 16761074 | - | STY2359 | - | - | - | H | 2 | 2 | +FIK 3.0 3.4 3.0 | hypothetical protein |
| 2194299..2194718 | - | 417 | 16761075 | - | STY2361 | - | - | - | H | 2 | 1 | putative exported protein | |
| 2194958..2195056 | - | 96 | 16761076 | - | STY2362 | - | - | - | H | 1 | 2 | +FV 3.2 4.1 | hypothetical protein |
| 2195153..2195350 | - | 195 | 16761077 | - | STY2363 | - | - | - | H | 2 | 2 | +NY 4.4 3.3 | hypothetical protein |
| 2195375..2195992 | - | 615 | 16761078 | - | STY2364 | - | - | - | H | 0 | 0 | putative exported protein | |
| 2207838..2208152 | + | 312 | 16761090 | yohN | STY2377 | - | - | - | H | 1 | 2 | conserved hypothetical protein | |
| 2208414..2209421 | - | 1005 | 16761091 | stcD | STY2378 | - | - | - | H | 2 | 0 | putative exported protein | |
| 2209437..2211926 | - | 2487 | 16761092 | stcC | STY2379 | N | COG3188 | - | H | 1 | 0 | putative outer membrane usher protein | |
| 2211940..2212623 | - | 681 | 16761093 | stcB | STY2380 | N | COG3121 | - | H | 2 | 0 | putative fimbrial chaperone protein | |
| 2212679..2213209 | - | 528 | 16761094 | stcA | STY2381 | - | - | - | H | 1 | 0 | putative fimbrial subunit protein | |
| 2213488..2213769 | - | 279 | 16761095 | yehE | STY2382 | - | - | - | H | 1 | 2 | +T 5.5 | conserved hypothetical protein |
| 2217595..2218053 | + | 456 | 16761098 | yehR | STY2385 | - | - | - | H | 1 | 1 | +K 4.0 | putative lipoprotein |
| 2218225..2218755 | + | 528 | 16761099 | - | STY2386 | - | - | - | H | 2 | 0 | +Y 3.1 | putative lipoprotein |
| 2304344..2305387 | - | 1041 | 16761175 | ccmH1 | STY2473 | O | COG3088 | + | H | 2 | 0 | cytochrome c-type biogenesis protein H1 | |
| 2305384..2305941 | - | 555 | 16761176 | dsbE1 | STY2474 | O | COG0526 | + | H | 1 | 0 | thiol:disulfide interchange protein | |
| 2305938..2307869 | - | 1929 | 16761177 | ccmF1 | STY2475 | O | COG1138 | + | H | 2 | 0 | cytochrome c-type biogenesis protein F1 | |
| 2307866..2308345 | - | 477 | 16761178 | ccmE1 | STY2476 | O | COG2332 | + | H | 2 | 1 | cytochrome c-type biogenesis protein E1 | |
| 2308342..2308554 | - | 210 | 16761179 | ccmD1 | STY2477 | N | COG3114 | + | H | 2 | 2 | +A 5.3 | heme exporter protein D1 |
| 2308551..2309288 | - | 735 | 16761180 | ccmC1 | STY2478 | O | COG0755 | + | H | 2 | 0 | +W 4.1 | heme exporter protein C1 |
| 2309340..2309999 | - | 657 | 16761181 | ccmB1 | STY2479 | O | COG2386 | + | H | 2 | 1 | +L 4.0 | heme exporter protein B1 |
| 2309996..2310613 | - | 615 | 16761182 | ccmA1 | STY2480 | Q | COG1131 | + | H | 2 | 2 | heme exporter protein A1 | |
| 2369264..2370631 | - | 1365 | 16761231 | menE | STY2535 | I | COG0318 | + | H | 0 | 0 | O-succinylbenzoic acid-CoA ligase | |
| 2370628..2371590 | - | 960 | 16761232 | menC | STY2536 | H | COG1441 | + | H | 0 | 0 | O-succinylbenzoate-CoA synthase | |
| 2371590..2372447 | - | 855 | 16761233 | menB | STY2537 | H | COG0447 | + | H | 0 | 0 | naphthoate synthase | |
| 2372462..2373220 | - | 756 | 16761234 | yfbB | STY2538 | R | COG0596 | + | H | 0 | 0 | conserved hypothetical protein | |
| 2373217..2374887 | - | 1668 | 16761235 | menD | STY2540 | H | COG1165 | + | H | 0 | 0 | menaquinone biosynthesis protein | |
| 2374973..2376268 | - | 1293 | 16761236 | menF | STY2541 | H | COG1169 | + | H | 0 | 0 | isochorismate synthase | |
| 2462589..2464511 | + | 1920 | 16761319 | - | STY2629 | I | COG1835 | H | 2 | 2 | putative lipopolysaccharide modification acyltransferase | ||
| 2525375..2525869 | - | 492 | 16761373 | eutK | STY2692 | - | - | H | 1 | 1 | ethanolamine utilization protein EutK | ||
| 2528839..2530242 | - | 1401 | 16761377 | eutA | STY2696 | D | COG0849 | + | H | 1 | 0 | putative ethanolamine utilization protein EutA | |
| 2531584..2532771 | - | 1185 | 16761379 | eutG | STY2698 | C | COG1454 | + | H | 2 | 0 | putative alchohol dehydrogenase | |
| 2532761..2533600 | - | 837 | 16761380 | eutJ | STY2699 | D | COG0849 | + | H | 1 | 0 | putative ethanolamine utilization protein EutJ | |
| 2533611..2535014 | - | 1401 | 16761381 | eutE | STY2700 | C | COG1012 | + | H | 0 | 0 | putative aldehyde dehydrogenase | |
| 2535026..2535715 | - | 687 | 16761382 | eutN | STY2701 | - | - | + | H | 1 | 0 | putative ethanolamine utilization protein EutN | |
| 2535756..2536772 | - | 1014 | 16761383 | eutD | STY2702 | C | COG0280 | + | H | 1 | 0 | putative phosphate acyltransferase | |
| 2536769..2537566 | - | 795 | 16761384 | - | STY2703 | - | - | + | H | 0 | 0 | putative cobalamin adenosyltransferase | |
| 2537563..2538252 | - | 687 | 16761385 | - | STY2704 | - | - | + | H | 0 | 0 | putative ethanolamine utilization protein EutQ | |
| 2586659..2587348 | + | 687 | 16761425 | - | STY2749 | S | COG3680 | H | 1 | 1 | conserved hypothetical protein | ||
| 2624844..2625707 | - | 861 | 16761442 | - | STY2772 | C | COG1145 | + | H | 0 | 0 | +C 5.9 | putative polyferredoxin |
| 2625707..2626516 | - | 807 | 16761443 | - | STY2773 | R | COG3302 | + | H | 1 | 0 | putative anaerobic reductase component | |
| 2629668..2631983 | - | 2313 | 16761445 | pbpC | STY2777 | M | COG0744 | + | H | 1 | 0 | penicillin-binding protein 1C | |
| 2631984..2636918 | - | 4932 | 16761446 | - | STY2778 | R | COG2373 | + | H | 0 | 0 | putative lipoprotein | |
| 2637127..2637969 | + | 840 | 16761447 | sseA | STY2779 | P | COG2897 | + | H | 1 | 0 | putative thiosulfate sulfurtransferase | |
| 2728865..2729383 | + | 516 | 16761524 | - | STY2858 | - | - | H | 1 | 2 | putative exported protein | ||
| 2779866..2780918 | - | 1050 | 16761562 | - | STY2897 | S | COG1357 | H | 1 | 2 | conserved hypothetical protein | ||
| 2851263..2851871 | - | 606 | 16761629 | hycB | STY2974 | C | COG1142 | + | H | 0 | 1 | +C 6.2 | formate hydrogenlyase subunit 2 |
| 2853114..2853986 | + | 870 | 16761632 | hypB | STY2977 | O | COG0378 | + | H | 0 | 0 | hydrogenase isoenzymes formation protein HypB | |
| 2853977..2854249 | + | 270 | 16761633 | hypC | STY2978 | O | COG0298 | + | H | 1 | 2 | hydrogenase isoenzymes formation protein HypC | |
| 2854249..2855370 | + | 1119 | 16761634 | hypD | STY2979 | O | COG0409 | + | H | 0 | 0 | hydrogenase isoenzymes formation protein HypD | |
| 2855409..2856377 | + | 966 | 16761635 | hypE | STY2980 | O | COG0309 | + | H | 0 | 0 | hydrogenase isoenzymes formation protein HypE | |
| 2856596..2858674 | + | 2076 | 16761636 | fhlA | STY2981 | K | COG3604 | + | H | 0 | 0 | transcriptional activator of the formate hydrogenlyase system | |
| 2862665..2862874 | + | 207 | 16761642 | - | STY2986a | - | - | - | H | 2 | 2 | +SV 4.7 3.6 | hypothetical protein |
| 2862970..2863725 | - | 753 | 16761643 | sprB | STY2987 | T | COG2197 | - | H | 0 | 0 | possible AraC-family transcriptional regulator | |
| 2864110..2864997 | - | 885 | 16761644 | sprA | STY2988 | K | COG2207 | - | H | 2 | 0 | possible AraC-family transcriptional regulator | |
| 2865343..2865795 | - | 450 | 16761645 | - | STY2989 | - | - | - | H | 1 | 0 | hypothetical protein found within S. typhi pathogenicity island 1 | |
| 2865811..2866482 | - | 669 | 16761646 | orgAb | STY2990 | - | - | - | H | 1 | 0 | oxygen-regulated invasion protein | |
| 2866439..2867017 | - | 576 | 16761647 | orgAa | STY2991 | - | - | - | H | 0 | 1 | oxygen-regulated invasion protein | |
| 2867010..2867768 | - | 756 | 16761648 | prgK | STY2992 | N | COG1766 | - | H | 0 | 0 | pathogenicity 1 island effector protein | |
| 2867765..2868070 | - | 303 | 16761649 | prgJ | STY2993 | - | - | - | H | 0 | 2 | pathogenicity 1 island effector protein | |
| 2868089..2868331 | - | 240 | 16761650 | prgI | STY2994 | - | - | - | H | 1 | 2 | pathogenicity 1 island effector protein | |
| 2868356..2869534 | - | 1176 | 16761651 | prgH | STY2995 | - | - | - | H | 0 | 0 | pathogenicity 1 island effector protein | |
| 2869850..2870779 | + | 927 | 16761652 | - | STY2996 | K | COG2207 | - | H | 2 | 0 | AraC-family transcriptional regulator | |
| 2871866..2873527 | + | 1659 | 16761653 | iagA | STY2999 | T | COG0745 | - | H | 1 | 0 | invasion protein regulator | |
| 2873545..2874027 | + | 480 | 16761654 | iagB | STY3000 | M | COG0741 | - | H | 2 | 2 | cell invasion protein | |
| 2874081..2875712 | - | 1629 | 16761655 | stpA | STY3001 | T | COG2453 | - | H | 1 | 0 | tyrosine phosphatase (associated with virulence) | |
| 2875699..2876049 | - | 348 | 16761656 | sicP | STY3002 | - | - | - | H | 2 | 2 | +I 3.3 | chaperone (associated with virulence) |
| 2876118..2876378 | - | 258 | 16761657 | - | STY3003 | - | - | - | H | 2 | 2 | doubtful CDS found within S. typhi pathogenicity island | |
| 2876422..2876670 | - | 246 | 16761658 | sipF | STY3004 | I | COG0236 | - | H | 2 | 2 | +D 4.3 | probable acyl carrier protein |
| 2876689..2878746 | - | 2055 | 16761659 | sipA | STY3005 | - | - | - | H | 0 | 0 | pathogenicity island 1 effector protein (function unknown) | |
| 2878765..2879787 | - | 1020 | 16761660 | sipD | STY3006 | - | - | - | H | 1 | 0 | +S 4.5 | pathogenicity island 1 effector protein |
| 2879857..2881086 | - | 1227 | 16761661 | sipC | STY3007 | N | COG0840 | - | H | 1 | 0 | +S 4.3 | pathogenicity island 1 effector protein |
| 2882898..2883395 | - | 495 | 16761663 | spaT | STY3009 | R | COG0457 | - | H | 1 | 0 | unknown function | |
| 2883533..2884603 | - | 1068 | 16761664 | spaS | STY3010 | N | COG1377 | - | H | 1 | 0 | secretory protein (associated with virulence) | |
| 2884590..2885381 | - | 789 | 16761665 | spaR | STY3011 | N | COG1684 | - | H | 0 | 0 | secretory protein (associated with virulence) | |
| 2885385..2885645 | - | 258 | 16761666 | spaQ | STY3012 | N | COG1987 | - | H | 0 | 2 | +L 4.1 | secretory protein (associated with virulence) |
| 2885671..2886345 | - | 672 | 16761667 | spaP | STY3013 | N | COG1338 | - | H | 2 | 0 | secretory protein (associated with virulence) | |
| 2888256..2888699 | - | 441 | 16761670 | spaM | STY3016 | - | - | - | H | 1 | 2 | +EQR 4.0 3.8 3.0 | secretory protein (associated with virulence) |
| 2889969..2890376 | - | 405 | 16761672 | spak | STY3018 | - | - | - | H | 1 | 1 | secretory protein (associated with virulence) | |
| 2890400..2892457 | - | 2055 | 16761673 | invA | STY3019 | N | COG1298 | - | H | 0 | 0 | possible secretory protein (associated with virulence) | |
| 2892482..2893600 | - | 1116 | 16761674 | invE | STY3020 | - | - | - | H | 0 | 0 | cell invasion protein | |
| 2893597..2895285 | - | 1686 | 16761675 | invG | STY3021 | N | COG1450 | - | H | 0 | 0 | secretory protein (associated with virulence) | |
| 2895282..2895932 | - | 648 | 16761676 | invF | STY3022 | K | COG2207 | - | H | 0 | 0 | possible AraC-family regulatory protein | |
| 2896388..2896831 | + | 441 | 16761677 | invH | STY3023 | - | - | - | H | 2 | 2 | +S 3.5 | cell adherance/invasion protein |
| 2897705..2897995 | + | 288 | 16761678 | - | STY3026 | - | - | - | H | 0 | 2 | +G -3.2 | hypothetical protein |
| 2897992..2898519 | + | 525 | 16761679 | - | STY3027 | K | COG0454 | - | H | 1 | 0 | hypothetical protein | |
| 2899240..2899896 | + | 654 | 16761680 | - | STY3030 | T | COG0639 | - | H | 2 | 0 | possible serine/threonine protein phosphatase | |
| 2900066..2900251 | - | 183 | 16761681 | - | STY3031 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 2900260..2900586 | - | 324 | 16761682 | - | STY3032 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 3071359..3071670 | - | 309 | 16761831 | - | STY3206 | S | COG3097 | H | 1 | 2 | conserved hypothetical protein | ||
| 3092099..3092557 | - | 456 | 16761849 | tnpA | STY3224 | L | COG1943 | H | 1 | 1 | transposase for insertion sequence element IS200 | ||
| 3134156..3134344 | + | 186 | 16761892 | - | STY3278 | - | - | - | H | 2 | 2 | +FIM 3.4 3.3 3.1 | hypothetical protein |
| 3134334..3134630 | + | 294 | 16761893 | - | STY3279 | - | - | - | H | 2 | 2 | +AK -3.1 4.1 | hypothetical protein |
| 3135014..3135280 | + | 264 | 16761894 | - | STY3281 | - | - | - | H | 2 | 2 | +AE -3.5 4.4 | bacteriocin immunity protein |
| 3135523..3135801 | + | 276 | 16761895 | - | STY3283 | - | - | - | H | 2 | 2 | +AE -3.5 5.1 | bacteriocin immunity protein |
| 3136204..3136707 | + | 501 | 16761896 | - | STY3285 | - | - | - | H | 2 | 2 | putative exported protein | |
| 3136966..3137151 | + | 183 | 16761897 | - | STY3287 | - | - | - | H | 2 | 2 | +HW 4.6 3.0 | hypothetical protein |
| 3137348..3137878 | + | 528 | 16761898 | - | STY3288 | - | - | - | H | 2 | 2 | +Y 3.9 | putative exported protein |
| 3137880..3138506 | + | 624 | 16761899 | - | STY3289 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 3138642..3138812 | - | 168 | 16761900 | - | STY3290 | - | - | - | H | 2 | 2 | +GKN -3.2 3.7 3.3 | hypothetical protein |
| 3138956..3139162 | + | 204 | 16761901 | - | STY3291 | - | - | - | H | 2 | 2 | +I 4.2 | possible membrane protein |
| 3139187..3139414 | - | 225 | 16761902 | - | STY3292 | - | - | - | H | 1 | 2 | +A -3.0 | putative membrane protein |
| 3139940..3140623 | + | 681 | 16761903 | - | STY3293 | T | COG2197 | - | H | 1 | 0 | LysR-family transcriptional regulator | |
| 3140728..3141252 | - | 522 | 16761904 | - | STY3294 | - | - | - | H | 0 | 2 | hypothetical protein | |
| 3142971..3143237 | - | 264 | 16761906 | - | STY3296 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 3143359..3144660 | - | 1299 | 16761907 | ordL | STY3297 | E | COG0665 | - | H | 0 | 0 | putative oxidoreductase | |
| 3148995..3149714 | - | 717 | 16761911 | - | STY3303 | R | COG0388 | H | 1 | 1 | possible hydrolase | ||
| 3470870..3471412 | - | 540 | 16762193 | - | STY3618 | - | - | H | 2 | 2 | putative membrane protein | ||
| 3507263..3507604 | - | 339 | 16762224 | - | STY3650 | - | - | H | 1 | 1 | conserved hypothetical protein | ||
| 3507601..3507963 | - | 360 | 16762225 | - | STY3651 | - | - | H | 1 | 2 | conserved hypothetical protein | ||
| 3516686..3516838 | - | 150 | 16762233 | - | STY3659 | - | - | - | H | 2 | 2 | +M 4.4 | hypothetical protein |
| 3516918..3517487 | - | 567 | 16762234 | cI | STY3660 | - | - | - | H | 2 | 0 | repressor protein | |
| 3517613..3517834 | + | 219 | 16762235 | - | STY3661 | - | - | - | H | 1 | 2 | hypothetical protein | |
| 3518551..3518775 | + | 222 | 16762237 | - | STY3663 | - | - | - | H | 1 | 2 | +Y 4.6 | hypothetical protein |
| 3518798..3519139 | + | 339 | 16762238 | - | STY3664 | - | - | - | H | 1 | 2 | +N 3.2 | conserved hypothetical protein |
| 3519664..3520521 | + | 855 | 16762241 | - | STY3667 | L | COG0338 | - | H | 0 | 0 | +Y 3.1 | DNA adenine methylase |
| 3523084..3523272 | + | 186 | 16762243 | - | STY3669 | - | - | - | H | 1 | 2 | +S 3.8 | hypothetical protein |
| 3523340..3523639 | - | 297 | 16762244 | - | STY3670 | - | - | - | H | 1 | 2 | possible lipoprotein | |
| 3523748..3524554 | - | 804 | 16762245 | - | STY3671 | - | - | - | H | 1 | 1 | +K 3.1 | possible lipoprotein |
| 3525240..3526154 | + | 912 | 16762246 | - | STY3672 | - | - | - | H | 1 | 1 | hypothetical protein | |
| 3526151..3526891 | + | 738 | 16762247 | - | STY3673 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 3656029..3656358 | - | 327 | 16762356 | - | STY3791 | S | COG1359 | H | 1 | 2 | conserved hypothetical protein | ||
| 3704925..3705236 | + | 309 | 16762403 | ygjN | STY3847 | - | - | H | 2 | 2 | conserved hypothetical protein | ||
| 3781269..3781967 | + | 696 | 16762467 | stgB | STY3919 | N | COG3121 | H | 2 | 2 | fimbrial chaperone protein | ||
| 3830135..3830752 | + | 615 | 16762503 | ccmA2 | STY3959 | Q | COG1131 | + | H | 2 | 2 | heme exporter protein A2 | |
| 3830752..3831408 | + | 654 | 16762504 | ccmB2 | STY3960 | O | COG2386 | + | H | 2 | 1 | +L 4.0 | heme exporter protein B2 |
| 3831451..3832197 | + | 744 | 16762505 | ccmC2 | STY3961 | O | COG0755 | + | H | 2 | 0 | +W 4.1 | heme exporter protein C2 |
| 3832194..3832406 | + | 210 | 16762506 | ccmD2 | STY3962 | N | COG3114 | + | H | 2 | 2 | +A 5.3 | heme exporter protein D2 |
| 3832403..3832882 | + | 477 | 16762507 | ccmE2 | STY3963 | O | COG2332 | + | H | 2 | 1 | cytochrome c-type biogenesis protein E2 | |
| 3832879..3834810 | + | 1929 | 16762508 | ccmF2 | STY3964 | O | COG1138 | + | H | 2 | 0 | cytochrome c-type biogenesis protein F2 | |
| 3834807..3835364 | + | 555 | 16762509 | dsbE2 | STY3965 | O | COG0526 | + | H | 1 | 0 | thiol:disulfide interchange protein | |
| 3835361..3836404 | + | 1041 | 16762510 | ccmH2 | STY3966 | O | COG3088 | + | H | 2 | 0 | cytochrome c-type biogenesis protein H2 | |
| 3836526..3837752 | + | 1224 | 16762511 | yidR | STY3967 | - | - | + | H | 0 | 0 | putative ATP/GTP-binding protein | |
| 3890702..3891166 | + | 462 | 16762556 | fidL | STY4029 | - | - | H | 1 | 1 | putative exported protein | ||
| 3894205..3894822 | - | 615 | 16762557 | rmbA | STY4032 | - | - | H | 2 | 1 | conserved hypothetical protein | ||
| 3929404..3930438 | + | 1032 | 16762586 | waaQ | STY4071 | M | COG0859 | - | H | 0 | 0 | lipopolysaccharide core biosynthesis protein | |
| 3931552..3932349 | + | 795 | 16762588 | waaP | STY4073 | - | - | - | H | 0 | 0 | lipopolysaccharide core biosynthesis protein | |
| 3932390..3932773 | + | 381 | 16762589 | - | STY4074 | - | - | - | H | 2 | 2 | +I 3.6 | hypothetical protein |
| 3932797..3933465 | + | 666 | 16762590 | - | STY4075 | - | - | - | H | 2 | 2 | hypothetical protein | |
| 3933525..3934604 | + | 1077 | 16762591 | waaB | STY4076 | M | COG0438 | - | H | 2 | 0 | lipopolysaccharide 1,6-galactosyltransferase | |
| 3934610..3935623 | + | 1011 | 16762592 | waaI | STY4077 | M | COG1442 | - | H | 2 | 0 | lipopolysaccharide 1,3-galactosyltransferase | |
| 3935641..3936651 | + | 1008 | 16762593 | waaJ | STY4078 | M | COG1442 | - | H | 2 | 0 | lipopolysaccharide 1,2-glucosyltransferase | |
| 3936674..3937372 | + | 696 | 16762594 | waaY | STY4079 | - | - | - | H | 2 | 1 | +K 4.1 | lipopolysaccharide core biosynthesis protein |
| 3937522..3938331 | + | 807 | 16762595 | waaZ | STY4080 | - | - | - | H | 2 | 0 | lipopolysaccharide core biosynthesis protein RfaZ | |
| 3938430..3939575 | + | 1143 | 16762596 | waaK | STY4081 | M | COG0438 | - | H | 2 | 0 | lipopolysaccharide 1,2-N-acetylglucosaminetransferase | |
| 3939632..3940846 | - | 1212 | 16762597 | waaL | STY4082 | - | - | - | H | 2 | 0 | O-antigen ligase | |
| 4010135..4010602 | + | 465 | 16762655 | yafP | STY4148 | K | COG0454 | H | 2 | 2 | putative acetyltransferase | ||
| 4072647..4073138 | - | 489 | 16762704 | - | STY4207 | - | - | H | 1 | 1 | putative membrane protein | ||
| 4085586..4085966 | - | 378 | 16762715 | - | STY4220 | J | COG0251 | H | 1 | 1 | putative regulatory protein | ||
| 4203167..4203493 | - | 324 | 16762810 | nirD | STY4321 | P | COG2146 | H | 1 | 1 | nitrite reductase (NAD(P)H) small subunit | ||
| 4231652..4232128 | + | 474 | 16762840 | bfr | STY4355 | P | COG2193 | H | 1 | 2 | bacterioferritin | ||
| 4322993..4323625 | + | 630 | 16762937 | - | STY4452 | - | - | - | H | 2 | 2 | +N 3.1 | putative exported protein |
| 4323622..4325010 | + | 1386 | 16762938 | - | STY4453 | N | COG0840 | - | H | 2 | 0 | putative integral membrane protein | |
| 4325000..4326307 | + | 1305 | 16762939 | - | STY4456 | M | COG1538 | - | H | 2 | 0 | putative type-I secretion protein | |
| 4326304..4327581 | + | 1275 | 16762940 | - | STY4457 | Q | COG0845 | - | H | 2 | 0 | putative type-I secretion protein | |
| 4327598..4337449 | + | 9849 | 16762941 | - | STY4458 | - | - | - | H | 0 | 0 | +T 4.5 | large repetitive protein |
| 4337507..4344277 | + | 6768 | 16762942 | - | STY4459 | - | - | - | H | 0 | 0 | +T 3.2 | large repetitive protein |
| 4344317..4346383 | + | 2064 | 16762943 | - | STY4460 | Q | COG2274 | - | H | 2 | 0 | putative type-1 secretion protein | |
| 4403286..4404191 | + | 903 | 16762990 | - | STY4511 | S | COG3204 | - | H | 0 | 0 | putative membrane protein | |
| 4404478..4404861 | - | 381 | 16762991 | - | STY4512 | - | - | - | H | 0 | 2 | +T 4.6 | hypothetical protein |
| 4404849..4405046 | - | 195 | 16762992 | - | STY4513 | - | - | - | H | 1 | 2 | +N 4.4 | hypothetical protein |
| 4405069..4405356 | - | 285 | 16762993 | - | STY4514 | T | COG2197 | - | H | 2 | 2 | +K 3.8 | putative GerE family regulatory protein |
| 4405353..4406228 | - | 873 | 16762994 | - | STY4515 | K | COG2207 | - | H | 2 | 0 | +S 3.2 | araC family regulatory protein |
| 4406494..4406712 | - | 216 | 16762995 | - | STY4516 | - | - | - | H | 2 | 2 | +GIP -3.2 3.1 5.1 | hypothetical protein |
| 4415107..4415664 | + | 555 | 16763004 | - | STY4526 | - | - | H | 1 | 1 | hypothetical protein | ||
| 4421390..4421839 | + | 447 | 16763008 | - | STY4534 | - | - | H | 1 | 1 | hypothetical protein | ||
| 4444208..4444966 | + | 756 | 16763032 | - | STY4563 | - | - | - | H | 1 | 1 | +S 3.1 | putative membrane protein |
| 4445457..4445696 | + | 237 | 16763034 | - | STY4565 | - | - | - | H | 1 | 2 | +FVW 5.2 3.3 3.2 | putative membrane protein |
| 4445726..4446088 | + | 360 | 16763035 | - | STY4566 | - | - | - | H | 0 | 2 | putative membrane protein | |
| 4447122..4448021 | + | 897 | 16763037 | - | STY4569 | - | - | - | H | 1 | 0 | hypothetical protein | |
| 4448011..4449489 | + | 1476 | 16763038 | - | STY4570 | - | - | - | H | 1 | 0 | putative exported protein | |
| 4449482..4449925 | + | 441 | 16763039 | - | STY4571 | - | - | - | H | 0 | 2 | putative lipoprotein | |
| 4449922..4450341 | + | 417 | 16763040 | - | STY4572 | - | - | - | H | 0 | 2 | +S 3.9 | hypothetical protein |
| 4458133..4458522 | - | 387 | 16763048 | - | STY4580 | - | - | - | H | 1 | 2 | putative membrane protein | |
| 4458746..4459105 | - | 357 | 16763049 | - | STY4582 | - | - | - | H | 2 | 2 | +KS 3.4 5.0 | possible exported protein |
| 4459393..4460640 | + | 1245 | 16763050 | - | STY4583 | E | COG0175 | - | H | 0 | 0 | conserved hypothetical protein | |
| 4461477..4462019 | - | 540 | 16763052 | - | STY4585 | - | - | H | 1 | 2 | hypothetical protein | ||
| 4473973..4474350 | + | 375 | 16763065 | - | STY4599 | - | - | H | 1 | 2 | hypothetical protein | ||
| 4487686..4488117 | - | 429 | 16763082 | - | STY4617 | - | - | + | H | 0 | 2 | putative phage tail protein | |
| 4488213..4488638 | - | 423 | 16763083 | - | STY4618 | N | COG0840 | + | H | 1 | 1 | putative regulatory protein | |
| 4488638..4489015 | - | 375 | 16763084 | - | STY4619 | - | - | + | H | 0 | 2 | putative membrane protein | |
| 4489020..4489490 | - | 468 | 16763085 | nucD2 | STY4620 | - | - | + | H | 1 | 0 | putative lysozyme | |
| 4489729..4489932 | - | 201 | 16763087 | - | STY4622 | - | - | + | H | 1 | 2 | +Q 3.2 | putative phage tail protein |
| 4489932..4490396 | - | 462 | 16763088 | - | STY4623 | - | - | + | H | 0 | 0 | putative capsid completion protein | |
| 4490490..4491140 | - | 648 | 16763089 | - | STY4624 | - | - | + | H | 1 | 0 | putative phage terminase | |
| 4491144..4492208 | - | 1062 | 16763090 | - | STY4625 | - | - | + | H | 0 | 0 | putative major capsid protein | |
| 4492225..4493058 | - | 831 | 16763091 | - | STY4626 | N | COG0840 | + | H | 0 | 0 | putative capsid protein | |
| 4493201..4494967 | + | 1764 | 16763092 | - | STY4627 | - | - | + | H | 0 | 0 | probable terminase subunit | |
| 4496774..4497838 | - | 1062 | 16763095 | - | STY4630 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 4497835..4498899 | - | 1062 | 16763096 | - | STY4631 | - | - | - | H | 2 | 0 | hypothetical protein | |
| 4498909..4499127 | - | 216 | 16763097 | - | STY4632 | - | - | - | H | 0 | 2 | hypothetical protein | |
| 4502229..4503089 | - | 858 | 16763099 | - | STY4636 | L | COG0338 | - | H | 1 | 0 | DNA adenine methylase | |
| 4503086..4503670 | - | 582 | 16763100 | - | STY4637 | L | COG0847 | - | H | 1 | 0 | putative exonuclease | |
| 4504195..4504536 | - | 339 | 16763103 | - | STY4640 | - | - | - | H | 1 | 2 | conserved hypothetical protein | |
| 4515425..4516492 | - | 1065 | 16763117 | vexA | STY4655 | M | COG1596 | - | H | 0 | 0 | Vi polysaccharide export protein | |
| 4516537..4518273 | - | 1734 | 16763118 | tviE | STY4656 | M | COG0438 | - | H | 0 | 0 | Vi polysaccharide biosynthesis protein TviE, Glycosyl transferases group 1 | |
| 4518711..4518986 | - | 273 | 16763120 | insA | STY4658 | L | COG3677 | - | H | 0 | 2 | +C 3.9 | insertion element IS1 protein |
| 4519050..4521545 | - | 2493 | 16763121 | tviD | STY4659 | R | COG0457 | - | H | 1 | 0 | Vi polysaccharide biosynthesis protein | |
| 4521569..4522615 | - | 1044 | 16763122 | tviC | STY4660 | M | COG0451 | - | H | 1 | 0 | Vi polysaccharide biosynthesis protein, epimerase | |
| 4522618..4523895 | - | 1275 | 16763123 | tviB | STY4661 | M | COG0677 | - | H | 1 | 0 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | |
| 4524140..4524679 | - | 537 | 16763124 | tviA | STY4662 | - | - | - | H | 2 | 2 | Vi polysaccharide biosynthesis protein | |
| 4527028..4528617 | + | 1587 | 16763127 | - | STY4665 | Q | COG1020 | - | H | 1 | 0 | hypothetical protein | |
| 4528781..4529794 | + | 1011 | 16763128 | - | STY4666 | L | COG0582 | - | H | 0 | 0 | probable phage integrase | |
| 4531179..4531631 | - | 450 | 16763131 | - | STY4669 | - | - | - | H | 2 | 2 | +FI 3.2 3.9 | putative membrane protein |
| 4532268..4534553 | - | 2283 | 16763132 | - | STY4670 | - | - | - | H | 1 | 0 | hypothetical protein | |
| 4534634..4536307 | - | 1671 | 16763133 | - | STY4671 | O | COG1219 | - | H | 0 | 0 | putative membrane protein | |
| 4590817..4591221 | + | 402 | 16763189 | yjfI | STY4727 | - | - | H | 2 | 2 | conserved hypothetical protein | ||
| 4658590..4659036 | - | 444 | 16763258 | - | STY4797 | L | COG2801 | H | 1 | 2 | putative membrane protein | ||
| 4686254..4687327 | - | 1071 | 16763284 | - | STY4823 | T | COG0515 | H | 2 | 2 | protein kinase | ||
| 4691877..4692197 | + | 318 | 16763292 | - | STY4831 | - | - | H | 1 | 2 | hypothetical P4 phage protein | ||
| 4717972..4718697 | - | 723 | 16763307 | - | STY4855 | S | COG0217 | H | 2 | 2 | conserved hypothetical protein | ||
| 4721482..4722090 | + | 606 | 16763310 | - | STY4858 | - | - | H | 1 | 2 | hypothetical protein | ||
| 4768834..4769271 | + | 435 | 16763352 | holD | STY4907 | - | - | H | 1 | 1 | DNA polymerase III, psi subunit |
