Pyrococcus furiosis: 2065 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Pyrococcus furiosis genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 49.3 | 34.3 | 39.0 | 40.9 |
st. dev. | 4.6 | 4.4 | 7.0 | 3.4 |
skewness | -0.1 | 0.1 | 1.3 | 0.6 |
kurtosis | 3.5 | 4.3 | 6.6 | 4.7 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 6.5 | 2.4 | M | 2.2 | 1.1 |
C | 0.6 | 0.9 | N | 3.4 | 1.4 |
D | 4.3 | 1.6 | P | 4.2 | 1.5 |
E | 8.9 | 3.2 | Q | 1.7 | 1.1 |
F | 4.4 | 1.9 | R | 5.4 | 2.1 |
G | 7.1 | 2.1 | S | 4.9 | 2.0 |
H | 1.5 | 1.0 | T | 4.4 | 1.7 |
I | 8.8 | 2.2 | V | 8.0 | 2.1 |
K | 8.2 | 2.5 | W | 1.2 | 1.0 |
L | 10.2 | 2.9 | Y | 3.9 | 1.5 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 20.9 | 11.6 | CAT (H) | 7.2 | 6.3 | CCT (P) | 10.8 | 7.3 | AGT (S) | 10.2 | 7.0 |
GCC (A) | 13.4 | 8.8 | CAC (H) | 7.9 | 7.0 | CCC (P) | 9.1 | 6.3 | AGC (S) | 10.5 | 6.9 |
GCG (A) | 5.9 | 5.7 | ATT (I) | 33.1 | 13.4 | CCG (P) | 3.0 | 4.1 | ACT (T) | 14.6 | 8.5 |
GCA (A) | 24.3 | 12.5 | ATC (I) | 13.8 | 8.8 | CCA (P) | 19.3 | 11.0 | ACC (T) | 7.5 | 6.1 |
TGT (C) | 3.8 | 6.4 | ATA (I) | 41.1 | 15.3 | CAG (Q) | 7.8 | 6.7 | ACG (T) | 5.7 | 5.4 |
TGC (C) | 2.4 | 4.1 | AAG (K) | 42.6 | 18.7 | CAA (Q) | 9.3 | 7.1 | ACA (T) | 15.7 | 9.4 |
GAT (D) | 27.1 | 12.3 | AAA (K) | 39.3 | 18.3 | CGT (R) | 1.2 | 2.5 | GTT (V) | 35.4 | 14.0 |
GAC (D) | 15.5 | 9.4 | TTG (L) | 14.1 | 9.1 | CGC (R) | 1.2 | 2.7 | GTC (V) | 10.6 | 7.1 |
GAG (E) | 40.1 | 19.5 | TTA (L) | 19.9 | 10.9 | CGG (R) | 0.8 | 2.1 | GTG (V) | 14.2 | 8.4 |
GAA (E) | 48.8 | 21.2 | CTT (L) | 24.5 | 11.8 | CGA (R) | 1.3 | 2.9 | GTA (V) | 19.2 | 10.0 |
TTT (F) | 26.6 | 13.8 | CTC (L) | 17.1 | 11.5 | AGG (R) | 21.0 | 12.3 | TGG (W) | 12.0 | 9.7 |
TTC (F) | 17.7 | 11.0 | CTG (L) | 8.5 | 7.3 | AGA (R) | 28.0 | 14.3 | TAT (Y) | 21.2 | 11.1 |
GGT (G) | 12.0 | 8.5 | CTA (L) | 17.9 | 10.1 | TCT (S) | 9.4 | 8.0 | TAC (Y) | 17.8 | 10.0 |
GGC (G) | 7.7 | 6.0 | ATG (M) | 22.2 | 10.6 | TCC (S) | 6.3 | 6.0 | TGA (.) | 1.9 | 2.5 |
GGG (G) | 14.2 | 8.3 | AAT (N) | 17.6 | 10.2 | TCG (S) | 2.5 | 3.9 | TAG (.) | 0.9 | 1.9 |
GGA (G) | 36.5 | 15.5 | AAC (N) | 16.5 | 9.5 | TCA (S) | 10.1 | 7.2 | TAA (.) | 1.4 | 2.3 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 1.29 | 0.67 | CAT (H) | 0.85 | 0.68 | CCT (P) | 1.01 | 0.75 | AGT (S) | 1.28 | 1.00 |
GCC (A) | 0.83 | 0.56 | CAC (H) | 0.93 | 0.69 | CCC (P) | 0.87 | 0.70 | AGC (S) | 1.38 | 1.07 |
GCG (A) | 0.37 | 0.42 | ATT (I) | 1.13 | 0.41 | CCG (P) | 0.29 | 0.47 | ACT (T) | 1.32 | 0.78 |
GCA (A) | 1.49 | 0.68 | ATC (I) | 0.49 | 0.35 | CCA (P) | 1.77 | 0.91 | ACC (T) | 0.68 | 0.60 |
TGT (C) | 0.75 | 0.85 | ATA (I) | 1.38 | 0.45 | CAG (Q) | 0.84 | 0.63 | ACG (T) | 0.53 | 0.59 |
TGC (C) | 0.48 | 0.72 | AAG (K) | 1.05 | 0.36 | CAA (Q) | 1.02 | 0.65 | ACA (T) | 1.42 | 0.81 |
GAT (D) | 1.26 | 0.44 | AAA (K) | 0.95 | 0.36 | CGT (R) | 0.13 | 0.34 | GTT (V) | 1.75 | 0.59 |
GAC (D) | 0.71 | 0.41 | TTG (L) | 0.83 | 0.56 | CGC (R) | 0.13 | 0.38 | GTC (V) | 0.53 | 0.40 |
GAG (E) | 0.90 | 0.32 | TTA (L) | 1.15 | 0.62 | CGG (R) | 0.09 | 0.25 | GTG (V) | 0.74 | 0.50 |
GAA (E) | 1.10 | 0.33 | CTT (L) | 1.46 | 0.68 | CGA (R) | 0.15 | 0.37 | GTA (V) | 0.97 | 0.51 |
TTT (F) | 1.18 | 0.46 | CTC (L) | 1.02 | 0.70 | AGG (R) | 2.34 | 1.14 | TGG (W) | - | - |
TTC (F) | 0.79 | 0.44 | CTG (L) | 0.49 | 0.45 | AGA (R) | 3.11 | 1.20 | TAT (Y) | 1.07 | 0.46 |
GGT (G) | 0.69 | 0.52 | CTA (L) | 1.06 | 0.63 | TCT (S) | 1.06 | 0.89 | TAC (Y) | 0.90 | 0.46 |
GGC (G) | 0.45 | 0.44 | ATG (M) | - | - | TCC (S) | 0.71 | 0.72 | TGA (.) | - | - |
GGG (G) | 0.82 | 0.52 | AAT (N) | 1.00 | 0.51 | TCG (S) | 0.29 | 0.52 | TAG (.) | - | - |
GGA (G) | 2.03 | 0.68 | AAC (N) | 0.95 | 0.50 | TCA (S) | 1.23 | 0.93 | TAA (.) | - | - |