Pseudomonas aeruginosa: 5567 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Pseudomonas aeruginosa genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 68.6 | 45.1 | 87.1 | 67.0 |
st. dev. | 5.9 | 4.8 | 6.4 | 3.8 |
skewness | -0.4 | 0.1 | -3.1 | -1.7 |
kurtosis | 3.3 | 3.5 | 18.0 | 10.1 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 11.7 | 3.1 | M | 2.1 | 1.1 |
C | 1.1 | 0.9 | N | 2.5 | 1.4 |
D | 5.2 | 1.8 | P | 5.1 | 1.8 |
E | 6.1 | 2.3 | Q | 4.2 | 1.8 |
F | 3.6 | 1.5 | R | 7.7 | 2.6 |
G | 8.3 | 2.3 | S | 5.5 | 1.8 |
H | 2.2 | 1.2 | T | 4.1 | 1.6 |
I | 4.1 | 1.8 | V | 6.9 | 2.1 |
K | 2.9 | 2.1 | W | 1.5 | 1.1 |
L | 12.5 | 3.6 | Y | 2.5 | 1.2 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 5.1 | 7.0 | CAT (H) | 6.6 | 5.9 | CCT (P) | 2.3 | 3.7 | AGT (S) | 2.7 | 3.8 |
GCC (A) | 67.7 | 22.6 | CAC (H) | 15.6 | 10.1 | CCC (P) | 13.5 | 8.4 | AGC (S) | 25.5 | 12.0 |
GCG (A) | 38.5 | 17.0 | ATT (I) | 3.0 | 4.5 | CCG (P) | 32.8 | 13.6 | ACT (T) | 1.7 | 3.1 |
GCA (A) | 5.1 | 5.7 | ATC (I) | 37.2 | 17.1 | CCA (P) | 2.3 | 3.8 | ACC (T) | 31.9 | 14.9 |
TGT (C) | 1.1 | 2.5 | ATA (I) | 1.0 | 2.8 | CAG (Q) | 35.6 | 15.8 | ACG (T) | 6.4 | 5.9 |
TGC (C) | 9.8 | 8.6 | AAG (K) | 24.9 | 17.9 | CAA (Q) | 6.4 | 5.8 | ACA (T) | 0.9 | 2.3 |
GAT (D) | 10.7 | 8.4 | AAA (K) | 4.0 | 5.7 | CGT (R) | 8.2 | 7.8 | GTT (V) | 3.0 | 5.2 |
GAC (D) | 41.6 | 16.6 | TTG (L) | 8.9 | 8.2 | CGC (R) | 49.1 | 19.0 | GTC (V) | 29.1 | 11.9 |
GAG (E) | 37.0 | 16.3 | TTA (L) | 0.3 | 1.5 | CGG (R) | 14.3 | 10.0 | GTG (V) | 33.0 | 14.1 |
GAA (E) | 24.0 | 12.9 | CTT (L) | 3.3 | 4.6 | CGA (R) | 2.6 | 3.9 | GTA (V) | 4.1 | 4.6 |
TTT (F) | 2.0 | 4.3 | CTC (L) | 27.9 | 13.0 | AGG (R) | 2.1 | 3.4 | TGG (W) | 15.0 | 10.9 |
TTC (F) | 33.6 | 15.0 | CTG (L) | 82.7 | 27.6 | AGA (R) | 0.6 | 2.1 | TAT (Y) | 5.4 | 5.4 |
GGT (G) | 8.3 | 7.6 | CTA (L) | 1.5 | 2.8 | TCT (S) | 0.9 | 2.5 | TAC (Y) | 19.5 | 10.9 |
GGC (G) | 60.4 | 19.9 | ATG (M) | 20.9 | 10.8 | TCC (S) | 12.0 | 7.7 | TGA (.) | 3.0 | 2.3 |
GGG (G) | 9.9 | 7.3 | AAT (N) | 3.7 | 5.0 | TCG (S) | 12.6 | 7.7 | TAG (.) | 0.5 | 1.4 |
GGA (G) | 4.3 | 5.2 | AAC (N) | 21.4 | 12.6 | TCA (S) | 0.6 | 2.1 | TAA (.) | 0.4 | 1.3 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 0.19 | 0.28 | CAT (H) | 0.58 | 0.50 | CCT (P) | 0.18 | 0.33 | AGT (S) | 0.29 | 0.44 |
GCC (A) | 2.32 | 0.55 | CAC (H) | 1.34 | 0.55 | CCC (P) | 1.06 | 0.61 | AGC (S) | 2.81 | 1.08 |
GCG (A) | 1.30 | 0.48 | ATT (I) | 0.22 | 0.33 | CCG (P) | 2.56 | 0.74 | ACT (T) | 0.17 | 0.34 |
GCA (A) | 0.18 | 0.24 | ATC (I) | 2.67 | 0.49 | CCA (P) | 0.18 | 0.33 | ACC (T) | 3.05 | 0.81 |
TGT (C) | 0.18 | 0.39 | ATA (I) | 0.08 | 0.22 | CAG (Q) | 1.67 | 0.32 | ACG (T) | 0.65 | 0.63 |
TGC (C) | 1.54 | 0.74 | AAG (K) | 1.66 | 0.48 | CAA (Q) | 0.31 | 0.29 | ACA (T) | 0.10 | 0.28 |
GAT (D) | 0.42 | 0.33 | AAA (K) | 0.28 | 0.37 | CGT (R) | 0.68 | 0.68 | GTT (V) | 0.18 | 0.31 |
GAC (D) | 1.58 | 0.34 | TTG (L) | 0.43 | 0.41 | CGC (R) | 3.85 | 1.00 | GTC (V) | 1.70 | 0.59 |
GAG (E) | 1.20 | 0.35 | TTA (L) | 0.02 | 0.09 | CGG (R) | 1.05 | 0.67 | GTG (V) | 1.87 | 0.62 |
GAA (E) | 0.80 | 0.34 | CTT (L) | 0.17 | 0.29 | CGA (R) | 0.20 | 0.32 | GTA (V) | 0.24 | 0.30 |
TTT (F) | 0.11 | 0.24 | CTC (L) | 1.35 | 0.58 | AGG (R) | 0.17 | 0.32 | TGG (W) | - | - |
TTC (F) | 1.87 | 0.30 | CTG (L) | 3.96 | 0.74 | AGA (R) | 0.05 | 0.24 | TAT (Y) | 0.44 | 0.44 |
GGT (G) | 0.41 | 0.38 | CTA (L) | 0.07 | 0.16 | TCT (S) | 0.10 | 0.31 | TAC (Y) | 1.51 | 0.49 |
GGC (G) | 2.90 | 0.60 | ATG (M) | - | - | TCC (S) | 1.34 | 0.86 | TGA (.) | - | - |
GGG (G) | 0.48 | 0.37 | AAT (N) | 0.30 | 0.39 | TCG (S) | 1.38 | 0.81 | TAG (.) | - | - |
GGA (G) | 0.21 | 0.27 | AAC (N) | 1.65 | 0.47 | TCA (S) | 0.07 | 0.24 | TAA (.) | - | - |