Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Pyrococcus abyssi (See the Abbreviations used):


Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
5795..6139 + 342 14520226 - PAB0005 - - H 1 2 hypothetical protein
17267..17653 - 384 14520237 - PAB2340 R COG1708 H 1 2 hypothetical protein
17640..18062 - 420 14520238 - PAB2339 S COG2445 H 1 2 hypothetical protein
37587..38024 - 435 14520259 - PAB2322 - - H 2 2 hypothetical protein
82066..82743 + 675 14520311 - PAB0053 - - H 2 1 hypothetical protein
112976..113362 - 384 14520334 - PAB2271 - - H 1 2 hypothetical protein
157917..158408 - 489 14520373 - PAB2248 R COG1268 H 2 1 BIOTIN SYNTHASE, PUTATIVE.
348141..348512 - 369 14520573 - PAB2111 - - H 1 1 hypothetical protein
383240..383521 - 279 14520610 - PAB7094 K COG1581 + H 0 2 conserved hypothetical protein
383609..385996 - 2385 14520611 - PAB2086 O COG0464 + H 0 0 CELL DIVISION CONTROL PROTEIN 48, AAA FAMILY (CDC48-1)
386096..387982 - 1884 14520612 aor-1 PAB2085 C COG2414 + H 2 0 tungsten-containing aldehyde ferredoxin oxidoreductase
387984..388484 - 498 14520613 - PAB2084 C COG1142 + H 2 2 +C 9.7 ELECTRON TRANSPORT PROTEIN
388468..388779 - 309 14520614 - PAB2083 - - + H 0 2 hypothetical protein
388870..389733 + 861 14520615 - PAB0268 R COG1266 + H 2 0 hypothetical protein
389752..390369 + 615 14520616 - PAB0269 Q COG0500 + H 2 2 METHLYTRANSFERASE
481171..482139 - 966 14520718 dpa PAB2025 N COG0552 + H 0 0 signal recognition particle receptor
483777..485003 + 1224 14520720 korA-1 PAB2359 C COG0674 + H 1 0 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha
485000..485854 + 852 14520721 korB-1 PAB0344 C COG1013 + H 1 0 2-ketoglutarate ferredoxin oxidoreductase, subunit beta
485858..486370 + 510 14520722 korG-1 PAB0345 C COG1014 + H 1 0 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma
486367..487524 + 1155 14520723 korA-2 PAB0346 C COG0674 + H 1 0 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha
552009..552428 + 417 14520797 hypA PAB0399 R COG0375 H 1 2 hydrogenase expression/formation protein
605115..605570 - 453 14520856 - PAB1938 K COG1522 H 2 1 transcriptional regulatory protein, AsnC family
622108..622464 - 354 14520872 - PAB1927 S COG1504 H 1 2 hypothetical protein
636920..638206 + 1284 14520890 tuf PAB0465 J COG0050 H 2 2 translation elongation factor EF-1, subunit alpha
691378..691773 + 393 14520946 - PAB0504 - - H 2 2 hypothetical protein
740368..740712 - 342 14520993 - PAB1840 - - H 2 2 hypothetical protein
745641..746099 + 456 14520998 - PAB0535 - - H 1 2 hypothetical protein
761871..762341 + 468 14521013 - PAB0550 R COG1848 H 2 1 hypothetical protein
763612..766026 - 2412 14521015 - PAB1827 - - - H 1 0 hypothetical protein
766026..768086 - 2058 14521016 - PAB1826 - - - H 1 0 +Y 3.7 hypothetical protein
768083..769507 - 1422 14521017 - PAB1825 - - - H 1 0 hypothetical protein
769504..769950 - 444 14521018 - PAB1824 - - - H 0 2 +N 3.5 hypothetical protein
769919..770347 - 426 14521019 - PAB1823 - - - H 1 2 hypothetical protein
770340..770939 - 597 14521020 - PAB1822 S COG1991 - H 2 0 +N 4.2 hypothetical protein
770973..771605 - 630 14521021 - PAB1821 - - - H 0 0 hypothetical protein
772663..774735 - 2070 14521023 - PAB1819 - - - H 0 0 hypothetical protein
774785..776869 - 2082 14521024 - PAB1818 - - - H 0 0 hypothetical protein
890454..890756 + 300 14521132 - PAB0619 K COG1846 - H 1 2 hypothetical protein
891196..892092 + 894 14521134 - PAB0621 - - - H 1 0 hypothetical protein
892306..892620 + 312 14521135 - PAB0622 - - - H 2 2 hypothetical protein
892992..893414 + 420 14521136 - PAB0623 S COG2090 - H 1 2 +D 3.3 hypothetical protein
928419..928730 + 309 14521168 - PAB0649 - - - H 2 2 +N 4.0 hypothetical protein
928713..929552 - 837 14521169 - PAB1730 S COG1624 - H 0 0 hypothetical protein
929615..930160 + 543 14521170 - PAB0651 H COG0163 - H 2 0 phenylacrylic acid decarboxylase
930153..930641 + 486 14521171 - PAB0652 K COG1522 - H 2 0 transcriptional regulatory protein, AsnC family
930645..931157 + 510 14521172 cyaB-like1 PAB0653 F COG1437 - H 1 0 adenylyl cyclase, CyaB-type, putative
1056979..1057302 - 321 14521308 - PAB1635 - - H 1 2 hypothetical protein
1119299..1119619 + 318 14521370 - PAB0777 - - H 2 2 hypothetical protein
1119904..1120350 - 444 14521371 - PAB1599 R COG2402 H 2 2 hypothetical protein
1135265..1135666 + 399 14521383 - PAB0786 R COG2402 H 2 2 hypothetical protein
1138481..1139344 + 861 14521387 - PAB0790 K COG2865 - H 0 0 hypothetical protein
1139607..1139825 + 216 14521388 - PAB3293 - - - H 0 2 +R 3.0 hypothetical protein
1141337..1142776 + 1437 14521390 - PAB0793 R COG2194 - H 0 0 hypothetical protein
1142781..1143083 - 300 14521391 - PAB1592 - - - H 2 2 +Q 3.1 hypothetical protein
1144054..1146141 - 2085 14521392 - PAB1590 - - - H 1 0 hypothetical protein
1146209..1147267 + 1056 14521393 - PAB0795 R COG1216 - H 2 0 rhamnosyl transferase related protein
1147280..1148275 + 993 14521394 - PAB0796 M COG0463 - H 2 0 SUGAR TRANSFERASE RELATED PROTEIN
1148250..1149284 - 1032 14521395 - PAB1589 S COG1817 - H 2 0 hypothetical protein
1149330..1149971 - 639 14521396 - PAB1588 M COG0438 - H 2 0 hypothetical protein
1153219..1153551 - 330 14521399 - PAB1585 R COG1487 H 2 2 hypothetical protein
1153996..1154490 - 492 14521400 - PAB1584 S COG4072 H 1 1 hypothetical protein
1163087..1163542 + 453 14521410 - PAB0804 P COG2111 H 2 1 hypothetical protein
1163539..1163922 + 381 14521411 - PAB0805 P COG2111 H 1 2 NADH-QUINONE OXIDOREDUCTASE CHAIN 5 related (EC 1.6.5.3)
1180868..1181218 - 348 14521427 - PAB1571 - - H 2 2 hypothetical protein
1183236..1183880 - 642 14521430 - PAB1566 - - H 1 2 hypothetical protein
1245640..1246044 + 402 14521485 - PAB0847 - - H 1 2 hypothetical protein
1260692..1261093 + 399 14521500 - PAB0859 R COG1848 H 2 2 hypothetical protein
1292407..1292820 - 411 14521537 - PAB1493 - - H 1 2 hypothetical protein
1314268..1314636 + 366 14521556 - PAB0898 R COG1708 H 2 1 hypothetical protein
1315083..1315397 + 312 14521558 - PAB0900 R COG1708 H 1 2 hypothetical protein
1324552..1325109 - 555 14521567 - PAB1470 C COG1014 H 1 1 keto-valine-ferredoxin oxidoreductase gamma chain
1386592..1387164 + 570 14521630 - PAB0950 K COG1675 - H 0 0 TRANSCRIPTION regulator
1387171..1387914 + 741 14521631 - PAB0951 S COG4044 - H 0 0 hypothetical protein
1387883..1388644 - 759 14521632 - PAB1428 - - - H 0 1 +L 3.9 hypothetical protein
1413389..1414525 - 1134 14521657 - PAB1411 M COG0463 - H 2 0 DOLICHOL-P-GLUCOSE SYNTHETASE
1414500..1415606 - 1104 14521658 - PAB1410 M COG0438 - H 2 0 LPS BIOSYNTHESIS RFBU RELATED PROTEIN.
1415758..1417029 - 1269 14521659 - PAB1409 R COG2244 - H 2 0 +F 3.1 hypothetical protein
1423135..1424307 + 1170 14521660 - PAB0973 M COG0438 - H 0 0 LPS BIOSYNTHESIS RFBU RELATED PROTEIN
1424421..1426721 + 2298 14521661 - PAB0974 R COG1287 - H 1 0 TRANSMEMBRANE OLIGOSACCHARYL TRANSFERASE, PUTATIVE.
1432128..1432472 - 342 14521669 - PAB1398 P COG1320 + H 2 2 +A 5.0 hypothetical protein
1433005..1433820 - 813 14521670 - PAB1396 C COG3260 + H 1 0 HYDROGENASE-4 COMPONENT I (EC 1.-.-.-).
1433817..1434374 - 555 14521671 - PAB1395 C COG1143 + H 1 2 +C 6.3 HYDROGENASE-4 COMPONENT B (EC 1.-.-.-)
1434375..1436141 - 1764 14521672 - PAB1394 C COG3261 + H 1 0 HYDROGENASE-4 COMPONENT G (EC 1.-.-.-)
1436145..1437044 - 897 14521673 - PAB1393 C COG0650 + H 0 0 HYDROGENASE-4 COMPONENT C (EC 1.-.-.-)
1440454..1440948 - 492 14521676 - PAB1390 C COG0437 + H 1 2 +C 10.4 FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT related protein
1440961..1443021 - 2058 14521677 - PAB1389 C COG0243 + H 0 0 ALPHA SUBUNIT OF FORMATE DEHYDROGENEASE
1472832..1473824 - 990 14521710 - PAB1366 R COG0618 + H 1 0 hypothetical protein
1473772..1474128 - 354 14521711 - PAB1365 - - + H 1 0 +E 3.5 hypothetical protein
1474155..1474508 - 351 14521712 - PAB1364 O COG1382 + H 2 2 +Q 12.5 hypothetical protein
1543464..1543832 + 366 14521781 - PAB1045 S COG1310 H 1 2 hypothetical protein
1562493..1563728 - 1233 14521799 - PAB1297 S COG1721 - H 1 0 hypothetical protein
1564641..1565669 - 1026 14521801 - PAB1295 - - - H 1 0 hypothetical protein
1565666..1567453 - 1785 14521802 - PAB1294 - - - H 2 0 hypothetical protein
1567512..1568273 + 759 14521803 - PAB1054 - - - H 1 0 hypothetical protein
1568503..1569489 + 984 14521804 - PAB1055 - - - H 1 0 hypothetical protein
1569500..1570288 + 786 14521805 - PAB1056 G COG0647 - H 0 0 SIMILAR TO SCHIZOSACCHAROMYCES POMBE 4-NITROPHENYLPHOSPHATASE.
1614554..1614997 - 441 14521842 - PAB1265 S COG1300 - H 2 2 +FV 5.1 -3.3 hypothetical protein
1615044..1615577 - 531 14521843 - PAB1264 - - - H 1 2 hypothetical protein
1616124..1618400 - 2274 14521844 - PAB1263 - - - H 2 0 hypothetical protein
1618381..1620798 - 2415 14521845 - PAB1262 - - - H 2 0 hypothetical protein
1621510..1622949 - 1437 14521846 - PAB1260 - - - H 2 0 hypothetical protein
1622946..1624901 - 1953 14521847 - PAB1258 - - - H 2 0 hypothetical protein
1624898..1628302 - 3402 14521848 - PAB1257 - - - H 2 0 hypothetical protein
1628312..1629175 - 861 14521849 - PAB1256 - - - H 2 0 hypothetical protein
1636183..1636713 + 528 14521854 - PAB1087 R COG2151 H 1 2 DTDP-4-KETO-L-RHAMNOSE REDUCTASE related
1648565..1649056 + 489 14521865 - PAB1093 - - - H 2 2 hypothetical protein
1649057..1650400 - 1341 14521866 - PAB1246 M COG1215 - H 1 0 hypothetical protein
1650436..1650867 + 429 14521867 - PAB1094 - - - H 2 1 hypothetical protein
1650864..1653134 + 2268 14521868 - PAB1095 - - - H 1 0 hypothetical protein
1653291..1653746 + 453 14521869 - PAB1096 - - - H 0 0 hypothetical protein
1656522..1656800 - 276 14521871 - PAB7424 - - - H 2 2 +EG 3.2 -3.3 hypothetical protein
1656910..1657428 + 516 14521872 - PAB1098 R COG0456 - H 1 0 N-terminal acetyltransferase
1657425..1657937 + 510 14521873 endA PAB1099 J COG1676 - H 0 0 tRNA intron endonuclease
1660771..1661286 - 513 14521876 - PAB1243 K COG1510 - H 0 0 hypothetical protein
1661359..1663599 + 2238 14521877 - PAB1101 R COG1033 - H 0 0 Transport protein
1663596..1666295 + 2697 14521878 - PAB1102 M COG1361 - H 0 0 hypothetical protein
1666279..1667403 - 1122 14521879 - PAB1241 S COG2237 - H 0 0 hypothetical protein
1667408..1667716 - 306 14521880 - PAB1240 S COG0011 - H 0 1 hypothetical protein
1667811..1668656 + 843 14521881 - PAB1103 L COG0648 - H 0 0 Endonuclease IV related protein
1677104..1677412 - 306 14521894 - PAB1233 - - H 1 2 hypothetical protein
1684709..1685011 - 300 14521904 - PAB1228 S COG1888 H 1 2 hypothetical protein

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