Mycobacterium leprae: 1605 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Mycobacterium leprae genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 64.3 | 47.0 | 68.6 | 60.0 |
st. dev. | 5.1 | 4.6 | 5.0 | 2.9 |
skewness | -0.4 | 0.1 | -1.0 | -0.7 |
kurtosis | 3.2 | 3.7 | 5.6 | 4.5 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 11.7 | 3.0 | M | 2.0 | 1.0 |
C | 1.0 | 0.9 | N | 2.7 | 1.3 |
D | 5.8 | 1.9 | P | 5.4 | 2.0 |
E | 5.0 | 2.1 | Q | 3.2 | 1.4 |
F | 3.0 | 1.4 | R | 7.1 | 2.3 |
G | 8.4 | 2.1 | S | 6.0 | 1.8 |
H | 2.3 | 1.1 | T | 6.1 | 1.8 |
I | 4.9 | 1.6 | V | 9.3 | 2.4 |
K | 2.7 | 1.8 | W | 1.4 | 1.0 |
L | 10.0 | 2.4 | Y | 2.2 | 1.1 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 21.3 | 10.7 | CAT (H) | 8.2 | 6.2 | CCT (P) | 6.9 | 6.0 | AGT (S) | 6.4 | 5.6 |
GCC (A) | 41.4 | 15.7 | CAC (H) | 14.2 | 8.6 | CCC (P) | 12.7 | 7.9 | AGC (S) | 13.2 | 7.9 |
GCG (A) | 35.7 | 14.9 | ATT (I) | 11.6 | 7.5 | CCG (P) | 24.5 | 11.9 | ACT (T) | 10.0 | 6.3 |
GCA (A) | 17.8 | 9.6 | ATC (I) | 32.0 | 13.6 | CCA (P) | 9.3 | 7.5 | ACC (T) | 29.2 | 12.5 |
TGT (C) | 3.6 | 4.7 | ATA (I) | 4.8 | 4.9 | CAG (Q) | 21.5 | 10.8 | ACG (T) | 13.9 | 7.8 |
TGC (C) | 6.4 | 6.1 | AAG (K) | 18.0 | 14.8 | CAA (Q) | 10.7 | 7.5 | ACA (T) | 7.8 | 6.4 |
GAT (D) | 21.2 | 11.1 | AAA (K) | 9.2 | 7.4 | CGT (R) | 12.7 | 8.4 | GTT (V) | 14.4 | 8.5 |
GAC (D) | 36.6 | 14.7 | TTG (L) | 23.5 | 11.8 | CGC (R) | 22.5 | 11.3 | GTC (V) | 30.1 | 11.9 |
GAG (E) | 28.5 | 14.7 | TTA (L) | 5.0 | 5.0 | CGG (R) | 19.9 | 10.3 | GTG (V) | 38.3 | 15.4 |
GAA (E) | 21.1 | 11.4 | CTT (L) | 8.6 | 6.1 | CGA (R) | 9.2 | 7.2 | GTA (V) | 9.8 | 6.6 |
TTT (F) | 8.9 | 6.8 | CTC (L) | 14.8 | 8.1 | AGG (R) | 3.8 | 4.2 | TGG (W) | 13.9 | 10.1 |
TTC (F) | 20.5 | 11.4 | CTG (L) | 39.3 | 15.0 | AGA (R) | 2.3 | 3.8 | TAT (Y) | 8.0 | 6.0 |
GGT (G) | 22.9 | 11.1 | CTA (L) | 8.6 | 6.4 | TCT (S) | 5.0 | 4.6 | TAC (Y) | 14.1 | 8.9 |
GGC (G) | 34.0 | 13.8 | ATG (M) | 19.9 | 10.0 | TCC (S) | 11.1 | 6.8 | TGA (.) | 1.8 | 2.4 |
GGG (G) | 14.9 | 8.4 | AAT (N) | 8.1 | 5.9 | TCG (S) | 17.7 | 8.6 | TAG (.) | 1.1 | 2.1 |
GGA (G) | 11.7 | 7.1 | AAC (N) | 18.5 | 10.5 | TCA (S) | 6.4 | 5.3 | TAA (.) | 0.9 | 2.0 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 0.75 | 0.37 | CAT (H) | 0.71 | 0.49 | CCT (P) | 0.54 | 0.52 | AGT (S) | 0.66 | 0.63 |
GCC (A) | 1.41 | 0.47 | CAC (H) | 1.23 | 0.52 | CCC (P) | 0.95 | 0.60 | AGC (S) | 1.35 | 0.81 |
GCG (A) | 1.22 | 0.46 | ATT (I) | 0.74 | 0.50 | CCG (P) | 1.80 | 0.72 | ACT (T) | 0.68 | 0.48 |
GCA (A) | 0.61 | 0.35 | ATC (I) | 1.94 | 0.56 | CCA (P) | 0.67 | 0.55 | ACC (T) | 1.87 | 0.66 |
TGT (C) | 0.60 | 0.65 | ATA (I) | 0.31 | 0.35 | CAG (Q) | 1.33 | 0.44 | ACG (T) | 0.92 | 0.55 |
TGC (C) | 1.09 | 0.76 | AAG (K) | 1.27 | 0.52 | CAA (Q) | 0.65 | 0.43 | ACA (T) | 0.52 | 0.43 |
GAT (D) | 0.74 | 0.36 | AAA (K) | 0.68 | 0.49 | CGT (R) | 1.07 | 0.69 | GTT (V) | 0.63 | 0.38 |
GAC (D) | 1.25 | 0.36 | TTG (L) | 1.40 | 0.66 | CGC (R) | 1.90 | 0.86 | GTC (V) | 1.30 | 0.48 |
GAG (E) | 1.14 | 0.38 | TTA (L) | 0.31 | 0.36 | CGG (R) | 1.67 | 0.81 | GTG (V) | 1.64 | 0.54 |
GAA (E) | 0.85 | 0.37 | CTT (L) | 0.53 | 0.45 | CGA (R) | 0.78 | 0.63 | GTA (V) | 0.43 | 0.32 |
TTT (F) | 0.61 | 0.44 | CTC (L) | 0.91 | 0.55 | AGG (R) | 0.34 | 0.44 | TGG (W) | - | - |
TTC (F) | 1.35 | 0.48 | CTG (L) | 2.33 | 0.76 | AGA (R) | 0.23 | 0.46 | TAT (Y) | 0.72 | 0.53 |
GGT (G) | 1.10 | 0.51 | CTA (L) | 0.53 | 0.45 | TCT (S) | 0.51 | 0.50 | TAC (Y) | 1.21 | 0.56 |
GGC (G) | 1.61 | 0.59 | ATG (M) | - | - | TCC (S) | 1.10 | 0.70 | TGA (.) | - | - |
GGG (G) | 0.72 | 0.42 | AAT (N) | 0.62 | 0.46 | TCG (S) | 1.76 | 0.84 | TAG (.) | - | - |
GGA (G) | 0.57 | 0.39 | AAC (N) | 1.33 | 0.50 | TCA (S) | 0.63 | 0.57 | TAA (.) | - | - |