| Coordinates | Strand | Length | PID | Gene name | Synonym | FunctionCode | COG | GCRegion | HGT | SimGC | SimMah | Dev.AA | Function |
| 119192..119524 | - | 330 | 15668295 | MJ0123 | MJ0123 | R | COG1451 | H | 2 | 1 | M. jannaschii predicted coding region MJ0123 | ||
| 123388..123684 | - | 294 | 15668297 | MJ0126 | MJ0126 | R | COG1669 | - | H | 2 | 1 | conserved hypothetical protein | |
| 124044..124340 | - | 294 | 15668299 | MJ0128 | MJ0128 | R | COG1669 | - | H | 1 | 1 | conserved hypothetical protein | |
| 124486..124998 | + | 510 | 15668300 | MJ0129 | MJ0129 | - | - | - | H | 1 | 0 | M. jannaschii predicted coding region MJ0129 | |
| 125178..126454 | - | 1275 | 15669898 | - | MJ0130m | L | COG0732 | - | H | 1 | 0 | Type I restriction-modification enzyme, S subunit | |
| 126470..126781 | - | 309 | 15668301 | MJ0131 | MJ0131 | - | - | - | H | 0 | 2 | +FW 3.1 5.9 | M. jannaschii predicted coding region MJ0131 |
| 216955..217536 | - | 579 | 15668400 | MJ0226.1 | MJ0226.1 | - | - | H | 1 | 2 | M. jannaschii predicted coding region MJ0226.1 | ||
| 308672..309004 | - | 330 | 15668506 | MJ0332 | MJ0332 | - | - | + | H | 0 | 2 | M. jannaschii predicted coding region MJ0332 | |
| 309804..310112 | + | 306 | 15668509 | MJ0334 | MJ0334 | - | - | + | H | 1 | 1 | M. jannaschii predicted coding region MJ0334 | |
| 310176..310919 | + | 741 | 15668510 | MJ0335 | MJ0335 | - | - | + | H | 1 | 0 | M. jannaschii predicted coding region MJ0335 | |
| 310929..311288 | + | 357 | 15668511 | MJ0336 | MJ0336 | - | - | + | H | 2 | 2 | +S 3.2 | M. jannaschii predicted coding region MJ0336 |
| 311296..312084 | + | 786 | 15668512 | MJ0337 | MJ0337 | - | - | + | H | 0 | 0 | M. jannaschii predicted coding region MJ0337 | |
| 312088..312402 | + | 312 | 15668513 | MJ0338 | MJ0338 | - | - | + | H | 1 | 2 | +M 3.2 | M. jannaschii predicted coding region MJ0338 |
| 322699..323151 | - | 450 | 15668527 | MJ0351 | MJ0351 | - | - | H | 1 | 1 | M. jannaschii predicted coding region MJ0351 | ||
| 327764..328171 | - | 405 | 15668536 | MJ0360 | MJ0360 | - | - | H | 1 | 1 | M. jannaschii predicted coding region MJ0360 | ||
| 332500..333030 | + | 528 | 15668541 | MJ0365 | MJ0365 | - | - | H | 1 | 2 | M. jannaschii predicted coding region MJ0365 | ||
| 488921..489382 | - | 459 | 15668733 | MJ0553 | MJ0553 | C | COG1254 | H | 1 | 1 | M. jannaschii predicted coding region MJ0553 | ||
| 555368..555721 | + | 351 | 15668808 | MJ0627 | MJ0627 | - | - | - | H | 2 | 0 | M. jannaschii predicted coding region MJ0627 | |
| 555705..556205 | + | 498 | 15668809 | MJ0628 | MJ0628 | - | - | - | H | 2 | 0 | M. jannaschii predicted coding region MJ0628 | |
| 556872..557765 | + | 891 | 15668811 | MJ0630 | MJ0630 | P | COG0306 | - | H | 1 | 0 | +S 3.2 | putative phosphate permease |
| 557765..558274 | + | 507 | 15668812 | MJ0631 | MJ0631 | C | COG0680 | - | H | 0 | 0 | hydrogenase maturation protease (hycI) | |
| 558291..559382 | + | 1089 | 15668813 | MJ0632 | MJ0632 | - | - | - | H | 1 | 0 | replication initiator protein, putative (dnaA) | |
| 564787..565638 | + | 849 | 15668816 | MJ0635 | MJ0635 | - | - | - | H | 0 | 0 | M. jannaschii predicted coding region MJ0635 | |
| 741895..742224 | - | 327 | 15669006 | MJ0819 | MJ0819 | - | - | H | 1 | 1 | M. jannaschii predicted coding region MJ0819 | ||
| 768444..769787 | + | 1341 | 15669032 | MJ0842 | MJ0842 | S | COG4054 | + | H | 1 | 0 | methyl coenzyme M reductase I, subunit beta (mcrB) | |
| 769800..770294 | + | 492 | 15669033 | MJ0843 | MJ0843 | S | COG4055 | + | H | 1 | 0 | methyl coenzyme M reductase I, operon protein D (mcrD) | |
| 770296..770898 | + | 600 | 15669034 | MJ0844 | MJ0844 | S | COG4056 | + | H | 2 | 1 | methyl coenzyme M reductase I, operon protein C (mcrC) | |
| 770908..771690 | + | 780 | 15669035 | MJ0845 | MJ0845 | S | COG4057 | + | H | 1 | 0 | methyl coenzyme M reductase I, subunit gamma (mcrG) | |
| 771822..773483 | + | 1659 | 15669036 | MJ0846 | MJ0846 | S | COG4058 | + | H | 2 | 0 | methyl coenzyme M reductase I, subunit alpha (mcrA) | |
| 780616..780945 | - | 327 | 15669047 | MJ0856.1 | MJ0856.1 | L | COG0675 | H | 1 | 2 | conserved hypothetical protein | ||
| 852759..853175 | - | 414 | 15669112 | MJ0922 | MJ0922 | R | COG0517 | H | 1 | 1 | conserved hypothetical protein | ||
| 875299..875661 | + | 360 | 15669134 | MJ0944 | MJ0944 | K | COG1733 | H | 2 | 1 | M. jannaschii predicted coding region MJ0944 | ||
| 996509..997381 | + | 870 | 15669246 | MJ1057 | MJ1057 | M | COG0463 | - | H | 2 | 0 | glycosyl transferase, putative | |
| 997392..999221 | + | 1827 | 15669247 | MJ1058 | MJ1058 | O | COG2192 | - | H | 1 | 0 | nodulation protein | |
| 999238..1000458 | + | 1218 | 15669248 | MJ1059 | MJ1059 | M | COG0438 | - | H | 0 | 0 | capsular polysaccharide biosynthsis protein M | |
| 1000455..1002068 | + | 1611 | 15669249 | MJ1060 | MJ1060 | - | - | - | H | 2 | 0 | M. jannaschii predicted coding region MJ1060 | |
| 1003077..1004531 | - | 1452 | 15669251 | MJ1062 | MJ1062 | M | COG0438 | - | H | 0 | 0 | spore coat polysaccharide biosynthesis protein G, putative (spsG) | |
| 1004528..1005259 | - | 729 | 15669252 | MJ1063 | MJ1063 | M | COG1861 | - | H | 1 | 0 | spore coat polysaccharide biosynthesis protein F (spsF) | |
| 1005261..1005905 | - | 642 | 15669253 | MJ1064 | MJ1064 | R | COG0110 | - | H | 0 | 0 | galactoside acetyltransferase (lacA) | |
| 1008091..1009614 | - | 1521 | 15669256 | MJ1068 | MJ1068 | R | COG2244 | - | H | 0 | 0 | polysaccharide biosynthesis protein (capF) isolog | |
| 1009625..1010803 | - | 1176 | 15669257 | MJ1069 | MJ1069 | M | COG0438 | - | H | 0 | 0 | galactosyltransferase isolog | |
| 1010924..1011397 | - | 471 | 15669258 | MJ1070 | MJ1070 | - | - | - | H | 2 | 1 | +Y 3.7 | M. jannaschii predicted coding region MJ1070 |
| 1011394..1012335 | - | 939 | 15669259 | MJ1071 | MJ1071 | L | COG0608 | - | H | 1 | 0 | M. jannaschii predicted coding region MJ1071 | |
| 1013795..1014133 | - | 336 | 15669262 | MJ1074 | MJ1074 | - | - | - | H | 1 | 0 | M. jannaschii predicted coding region MJ1074 | |
| 1015631..1016644 | - | 1011 | 15669264 | MJ1076 | MJ1076 | - | - | - | H | 2 | 0 | M. jannaschii predicted coding region MJ1076 | |
| 1129352..1131358 | + | 2004 | 15669884 | HdrA | MJ1190m | C | COG1148 | + | H | 2 | 0 | Heterodisulfide reductase, subunit A | |
| 1131591..1131995 | + | 402 | 15669893 | flpD | MJ1190a | C | COG1908 | + | H | 2 | 2 | +A 3.1 | Coenzyme F420-reducing hydrogenase, delta subunit |
| 1133010..1134481 | + | 1392 | 15669900 | vhuA | MJ1192m | C | COG3259 | + | H | 1 | 0 | methylviologen-reducing hydrogenase, alpha subunit | |
| 1134586..1135770 | + | 1182 | 15669380 | MJ1193 | MJ1193 | C | COG1145 | + | H | 1 | 2 | +C 7.5 | polyferredoxin (mvhB) |
| 1135794..1137101 | + | 1305 | 15669885 | fwdB | MJ1194m | C | COG1029 | + | H | 2 | 0 | formylmethanofuran dehydrogenase (tungsten), subunit B, selenocysteine-containing | |
| 1137352..1138908 | - | 1554 | 15669381 | MJ1195 | MJ1195 | E | COG0119 | + | H | 1 | 0 | 2-isopropylmalate synthase (leuA) | |
| 1140230..1142104 | + | 1872 | 15669383 | MJ1197 | MJ1197 | J | COG0441 | + | H | 0 | 0 | threonyl-tRNA synthetase (thrS) | |
| 1142320..1144605 | + | 2283 | 15669384 | MJ1198 | MJ1198 | L | COG1107 | + | H | 0 | 0 | conserved hypothetical protein | |
| 1156527..1159583 | - | 3054 | 15669399 | MJ1214 | MJ1214 | L | COG0610 | - | H | 0 | 0 | type I restriction-modification enzyme 1, R subunit | |
| 1160241..1160537 | - | 294 | 15669402 | MJ1217 | MJ1217 | R | COG1669 | - | H | 1 | 2 | conserved hypothetical protein | |
| 1160579..1161856 | - | 1275 | 15669403 | MJ1218 | MJ1218 | L | COG0732 | - | H | 0 | 0 | type I restriction-modification enzyme 1, S subunit | |
| 1161869..1162183 | - | 312 | 15669404 | MJ1219 | MJ1219 | - | - | - | H | 1 | 2 | +KW -3.2 3.1 | M. jannaschii predicted coding region MJ1219 |
| 1235149..1235907 | - | 756 | 15669476 | MJ1288 | MJ1288 | N | COG0630 | - | H | 0 | 0 | type II secretion system protein | |
| 1235904..1236275 | - | 369 | 15669477 | MJ1288.1 | MJ1288.1 | - | - | H | 1 | 1 | M. jannaschii predicted coding region MJ1288.1 | ||
| 1236278..1236775 | - | 495 | 15669478 | MJ1289 | MJ1289 | - | - | - | H | 1 | 0 | +TY 3.2 3.1 | M. jannaschii predicted coding region MJ1289 |
| 1236772..1237710 | - | 936 | 15669479 | MJ1290 | MJ1290 | - | - | - | H | 1 | 0 | +NY 3.3 3.4 | M. jannaschii predicted coding region MJ1290 |
| 1237723..1238445 | - | 720 | 15669480 | MJ1291 | MJ1291 | - | - | - | H | 1 | 0 | +N 3.1 | M. jannaschii predicted coding region MJ1291 |
| 1238659..1240317 | + | 1656 | 15669481 | MJ1292 | MJ1292 | - | - | - | H | 0 | 0 | M. jannaschii predicted coding region MJ1292 | |
| 1240409..1241122 | + | 711 | 15669482 | MJ1292.1 | MJ1292.1 | - | - | - | H | 0 | 0 | M. jannaschii predicted coding region MJ1292.1 | |
| 1241169..1241864 | + | 693 | 15669483 | MJ1293 | MJ1293 | - | - | - | H | 1 | 0 | M. jannaschii predicted coding region MJ1293 | |
| 1280407..1280790 | + | 381 | 15669520 | MJ1330 | MJ1330 | I | COG1267 | H | 1 | 1 | conserved hypothetical protein | ||
| 1370826..1371305 | - | 477 | 15669600 | MJ1410 | MJ1410 | J | COG1374 | H | 1 | 2 | conserved hypothetical protein | ||
| 1381706..1382011 | - | 303 | 15669610 | MJ1419 | MJ1419 | S | COG1698 | H | 1 | 2 | conserved hypothetical protein | ||
| 1454763..1455215 | + | 450 | 15669677 | MJ1484 | MJ1484 | - | - | H | 1 | 1 | M. jannaschii predicted coding region MJ1484 | ||
| 1528765..1529238 | + | 471 | 15669748 | MJ1553 | MJ1553 | K | COG0640 | H | 1 | 2 | transcriptional regulatory protein, arsR family | ||
| 1593388..1593765 | - | 375 | 15669814 | MJ1618 | MJ1618 | G | COG0662 | H | 1 | 2 | conserved hypothetical protein | ||
| 1620569..1621033 | + | 462 | 15669835 | MJ1639 | MJ1639 | - | - | H | 1 | 2 | M. jannaschii predicted coding region MJ1639 |
