Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Listeria monocytogenes (See the Abbreviations used):
Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
74239..75228 + 987 16802115 - lmo0067 O COG1397 - H 1 0 similar to dinitrogenase reductase ADP-ribosylation system
75342..75665 + 321 16802116 - lmo0068 - - - H 1 2 +Y 3.3 lmo0068
75832..76125 + 291 16802117 - lmo0069 - - - H 1 2 +G 3.0 lmo0069
76262..76984 + 720 16802118 - lmo0070 - - - H 2 1 lmo0070
78090..78374 + 282 16802121 - lmo0073 - - - H 2 2 +LS 3.8 -3.1 lmo0073
78362..78811 + 447 16802122 - lmo0074 - - - H 2 2 +FI 3.9 3.1 lmo0074
123760..124062 + 300 16802167 - lmo0119 - - H 1 2 lmo0119
143016..143258 + 240 16802189 - lmo0141 - - - H 2 2 +INT 3.9 3.1 -3.1 lmo0141
143366..143722 + 354 16802190 - lmo0142 - - - H 2 2 lmo0142
144097..144273 + 174 16802191 - lmo0143 - - - H 2 2 +DV 3.3 -3.4 lmo0143
144397..144840 + 441 16802192 - lmo0144 - - - H 2 0 lmo0144
145354..145560 + 204 16802194 - lmo0146 - - - H 2 2 hypothetical protein
145869..146306 + 435 16802195 - lmo0147 - - - H 2 0 lmo0147
146306..146656 + 348 16802196 - lmo0148 - - - H 2 2 +Y 4.6 lmo0148
147399..147764 + 363 16802198 - lmo0150 - - - H 2 2 lmo0150
147884..148291 + 405 16802199 - lmo0151 - - - H 2 0 lmo0151
248555..249013 + 456 16802275 - lmo0229 - - H 2 1 highly similar to transcription repressor of class III stress genes (CtsR)
319049..319528 + 477 16802339 - lmo0293 S COG1576 H 2 2 conserved hypothetical protein, highly similar to B. subtilis YydA proteinYyd
327113..327454 - 339 16802347 - lmo0301 G COG1447 H 1 2 similar to PTS beta-glucoside-specific enzyme IIA component
327941..328495 + 552 16802349 - lmo0303 - - - H 2 1 +K 4.1 putaive secreted, lysin rich protein
328701..329966 + 1263 16802350 - lmo0304 - - - H 2 0 lmo0304
331063..331446 - 381 16802352 - lmo0306 - - - H 2 2 lmo0306
331543..332688 + 1143 16802353 - lmo0307 - - - H 2 0 lmo0307
333534..335195 + 1659 16802354 - lmo0309 S COG1479 - H 2 0 similar to unknown protein
335350..336426 + 1074 16802355 - lmo0310 - - - H 2 0 +K 3.2 lmo0310
336541..337161 + 618 16802356 - lmo0311 - - - H 2 0 lmo0311
337161..338363 + 1200 16802357 - lmo0312 - - - H 2 0 similar to unknown proteins
338341..339087 + 744 16802358 - lmo0313 L COG0084 - H 2 0 conserved hypothetical protein
339270..340055 + 783 16802359 - lmo0314 S COG3394 + H 2 2 similar to unknown protein
340278..340952 + 672 16802360 - lmo0315 K COG0819 + H 2 2 similar to thiamin biosynthesis protein
340945..341754 + 807 16802361 - lmo0316 H COG2145 + H 2 0 +A 3.4 similar to hydroxyethylthiazole kinase (ThiM)
341751..342554 + 801 16802362 - lmo0317 H COG0351 + H 2 0 similar to phosphomethylpyrimidine kinase (ThiD)
342551..343195 + 642 16802363 - lmo0318 H COG0352 + H 2 0 similar to thiamin-phosphate pyrophosphorylase (ThiE)
343221..344636 - 1413 16802364 - lmo0319 G COG2723 + H 1 0 similar to phospho-beta-glucosidase
369377..369757 + 378 16802383 - lmo0338 - - H 2 2 lmo0338
403279..403725 + 444 16802423 - lmo0378 - - H 2 1 lmo0378
403743..404198 + 453 16802424 - lmo0379 - - H 2 1 lmo0379
428576..428968 + 390 16802452 - lmo0407 - - H 1 2 lmo0407
443303..443851 - 546 16802467 - lmo0423 K COG1595 H 1 2 similar to RNA polymerase ECF-type sigma factor
452524..453093 + 567 16802475 - lmo0431 R COG0110 H 1 1 similar to acetyltransferase
500799..501284 + 483 16802506 - lmo0462 - - H 1 2 lmo0462
502899..504629 + 1728 16802510 - lmo0466 - - - H 2 0 lmo0466
504674..504997 + 321 16802511 - lmo0467 - - - H 1 2 lmo0467
504972..505277 + 303 16802512 - lmo0468 - - - H 2 2 +C 3.4 lmo0468
505351..506223 + 870 16802513 - lmo0469 - - - H 2 0 lmo0469
506368..506997 + 627 16802514 - lmo0470 L COG0863 - H 1 0 weakly similar to site-specific DNA-methyltransferase
507723..508733 + 1008 16802515 - lmo0471 - - - H 1 0 lmo0471
509400..510287 + 885 16802516 - lmo0472 - - - H 2 0 lmo0472
511215..511562 + 345 16802517 - lmo0474 - - - H 2 0 lmo0474
511966..512208 + 240 16802518 - lmo0475 - - - H 2 2 +IW 3.9 3.2 lmo0475
519789..520268 + 477 16802526 - lmo0483 S COG3708 H 1 2 lmo0483
546314..546673 - 357 16802555 - lmo0512 - - H 1 2 lmo0512
552563..552931 - 366 16802561 - lmo0518 S COG3759 H 1 2 similar to unknown protein
601463..602218 - 753 16802606 hisF lmo0563 E COG0107 + H 2 2 highly similar to cyclase HisF
602208..602930 - 720 16802607 hisA lmo0564 E COG0106 + H 0 0 highly similar to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
603536..604120 - 582 16802609 hisB lmo0566 E COG0131 + H 0 0 imidazoleglycerol-phosphate dehydratase
604121..605404 - 1281 16802610 hisD lmo0567 E COG0141 + H 0 0 highly similar to histidinol dehydrogenases
615353..615811 - 456 16802620 - lmo0577 S COG3610 H 1 1 lmo0577
643400..643744 - 342 16802646 - lmo0604 G COG0477 H 1 2 similar to B. subtilis YvlA protein
792879..793754 + 873 16802809 - lmo0767 G COG0395 - H 1 0 similar to ABC transporter, permease protein
795034..796062 + 1026 16802811 - lmo0769 R COG1331 - H 0 0 similar to alpha-1,6-mannanase
796075..797193 - 1116 16802812 - lmo0770 K COG1609 - H 0 0 similar to transcriptional regulator (LacI family)
797353..798105 + 750 16802813 - lmo0771 - - - H 2 0 lmo0771
798141..798788 + 645 16802814 - lmo0772 K COG1802 - H 1 0 similar to transcription regulator
804382..804729 + 345 16802822 - lmo0780 - - H 2 1 lmo0780
833117..833587 - 468 16802846 - lmo0804 - - H 1 1 lmo0804
833615..834076 - 459 16802847 - lmo0805 - - H 1 1 lmo0805
839520..840062 + 540 16802854 - lmo0812 T COG0317 H 1 1 lmo0812
926511..926858 + 345 16802929 - lmo0888 T COG2337 H 1 1 similar to B. subtilis YdcE protein
928311..928721 + 408 16802932 rsbT lmo0891 T COG2172 H 1 2 highly similar to positive regulation of sigma-B activity
941615..942112 + 495 16802946 - lmo0905 - - H 1 1 lmo0905
1097786..1098988 + 1200 16803111 - lmo1071 D COG0772 - H 0 0 similar to cell-division protein RodA and FtsW
1102858..1103757 + 897 16803113 - lmo1073 P COG0614 - H 1 0 similar to metal binding protein (ABC transporter)
1104048..1104851 + 801 16803114 - lmo1074 M COG1682 - H 1 0 +Y 3.2 highly similar to teichoic acid translocation permease protein TagG
1104863..1105864 + 999 16803115 - lmo1075 G COG1134 - H 1 0 similar to teichoic acid translocation ATP-binding protein TagH (ABC transporter)
1106041..1107759 + 1716 16803116 - lmo1076 N COG1705 - H 0 0 similar to autolysin (EC 3.5.1.28) (N-acetylmuramoyl-L-alanine amidase)
1107975..1109663 + 1686 16803117 - lmo1077 M COG1887 - H 1 0 similar to teichoic acid biosynthesis protein B
1110769..1113627 + 2856 16803119 - lmo1079 - - - H 1 0 similar to B. subtilis YfhO protein
1113759..1115630 + 1869 16803120 - lmo1080 M COG0463 - H 1 0 similar to B. subtilis minor teichoic acids biosynthesis protein GgaB
1117093..1118079 + 984 16803123 - lmo1083 M COG1088 - H 1 0 similar to dTDP-D-glucose 4,6-dehydratase
1118082..1118912 + 828 16803124 - lmo1084 M COG1091 - H 1 0 similar to DTDP-L-rhamnose synthetase
1118932..1121022 + 2088 16803125 - lmo1085 M COG1887 - H 1 0 similar to teichoic acid biosynthesis protein B
1121098..1121808 + 708 16803126 - lmo1086 I COG1211 - H 1 0 +I 3.0 similar to CDP-ribitol pyrophosphorylase
1122918..1124078 + 1158 16803128 tagB lmo1088 M COG1887 - H 1 0 similar to teichoic acid biosynthesis protein B precursor
1124484..1125467 + 981 16803130 - lmo1090 M COG0463 - H 1 0 similar to glycosyltransferases
1125482..1126495 + 1011 16803131 - lmo1091 M COG0463 - H 0 0 similar to glysosyltransferases
1129412..1129816 + 402 16803135 - lmo1095 G COG1440 H 1 2 similar to PTS system, cellobiose-specific IIB component (cel A)
1131558..1132760 - 1200 16803137 - lmo1097 L COG0582 - H 0 0 similar to integrases
1133466..1133696 - 228 16803138 - lmo1098 - - - H 2 2 highly similar to TN916 ORF8
1133698..1134117 - 417 16803139 - lmo1099 K COG1595 - H 1 0 similar to a protein encoded by Tn916
1134472..1136595 - 2121 16803140 cadA lmo1100 P COG2217 - H 1 0 cadmium resistance protein
1136900..1137400 + 498 16803141 - lmo1101 N COG0597 - H 2 0 similar to lipoprotein signal peptidase
1137533..1137868 - 333 16803142 - lmo1102 K COG0640 - H 2 2 +C 4.4 similar to cadmium efflux system accessory proteins
1149887..1152475 - 2586 16803155 - lmo1115 - - - H 0 0 similar to fibrinogen-binding protein (LPXTG motif)
1153010..1153783 + 771 16803156 - lmo1116 K COG2207 - H 2 0 similar to regulatory proteins
1153848..1154204 + 354 16803157 - lmo1117 E COG0346 - H 1 0 lmo1117
1154864..1156381 - 1515 16803158 - lmo1118 - - - H 2 0 lmo1118
1156384..1157241 - 855 16803159 - lmo1119 L COG0338 - H 2 0 similar to methylases
1157592..1158008 + 414 16803160 - lmo1120 - - - H 1 0 lmo1120
1158020..1158388 + 366 16803161 - lmo1121 - - - H 2 2 +N 4.0 lmo1121
1158425..1158844 + 417 16803162 - lmo1122 - - - H 2 2 lmo1122
1158930..1159403 + 471 16803163 - lmo1123 - - - H 2 1 +N 4.7 lmo1123
1159393..1159830 + 435 16803164 - lmo1124 - - - H 2 1 +T -3.1 lmo1124
1160220..1160753 + 531 16803165 - lmo1125 - - - H 2 0 lmo1125
1161220..1161675 + 453 16803167 - lmo1127 - - - H 0 1 +C 3.9 lmo1127
1163277..1163996 - 717 16803170 - lmo1130 K COG0789 - H 0 0 similar to transcription regulators
1168021..1168368 + 345 16803174 - lmo1134 K COG0789 H 2 1 similar to regulatory proteins
1171662..1172009 - 345 16803177 - lmo1137 - - H 2 1 lmo1137
1266040..1266564 + 522 16803280 - lmo1240 R COG0622 H 1 1 conserved hypothetical protein, similar to B. subtilis YsnB protein
1286830..1287225 - 393 16803302 - lmo1262 K COG1396 H 1 2 similar to transcriptional regulator (phage-related)
1363272..1363628 - 354 16803374 - lmo1334 - - H 1 2 similar to B. subtilis YqzD protein
1366220..1366432 + 210 16803378 - lmo1338 - - - H 2 2 similar to B. subtilis yqgQ
1367559..1368650 + 1089 16803380 - lmo1340 - - - H 2 0 similar to B. subtilis YqgU protein
1368668..1368985 - 315 16803381 - lmo1341 - - - H 2 2 +T 4.8 weakly similar to B. subtilis comG operon protein 7 (comGG)
1368982..1369449 - 465 16803382 - lmo1342 - - - H 1 1 +Q 3.3 similar to B. subtilis comG operon protein 6
1369412..1369696 - 282 16803383 - lmo1343 N COG2165 - H 0 2 +C 3.7 similar to comG operon protein 5 (comGE)
1369683..1370111 - 426 16803384 - lmo1344 - - - H 2 2 +T 4.2 similar to comG operon protein 4 (comGD)
1370108..1370431 - 321 16803385 - lmo1345 - - - H 0 2 +S 4.0 similar to B. subtilis comG operon protein 3
1370445..1371476 - 1029 16803386 comGB lmo1346 N COG1459 - H 1 0 similar to B. subtilis comG operon protein 2
1511375..1511812 + 435 16803518 - lmo1478 K COG0789 H 1 2 similar to transcriptional regulator (MerR family)
1514257..1515288 - 1029 16803521 - lmo1481 L COG1466 - H 0 0 similar to unknown protein
1515356..1517578 - 2220 16803522 comEC lmo1482 R COG0658 - H 0 0 similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding
1518245..1518847 - 600 16803524 comEA lmo1484 L COG1555 - H 1 0 similar to integral membrane protein ComEA
1518950..1519681 - 729 16803525 - lmo1485 Q COG0500 - H 1 0 similar to unknown proteins
1561538..1561882 - 342 16803566 - lmo1526 - - H 1 1 similar to unknown proteins
1704618..1705181 - 561 16803695 - lmo1655 - - H 2 2 similar to unknown proteins
1907218..1907919 - 699 16803872 pyrF lmo1832 F COG0284 + H 0 0 highly similar to orotidine 5'-phosphate decarboxylases
1907916..1908830 - 912 16803873 pyrD lmo1833 F COG0167 + H 2 0 highly similar to dihydroorotase dehydrogenase
1908827..1909591 - 762 16803874 pyrDII lmo1834 H COG0543 + H 1 1 +C 4.3 highly similar to dihydroorotate dehydrogenase (electron transfer subunit)
1909614..1912826 - 3210 16803875 pyrAB lmo1835 E COG0458 + H 0 0 highly similar to carbamoyl-phosphate synthetase (catalytic subunit)
1912819..1913910 - 1089 16803876 pyrAa lmo1836 E COG0505 + H 0 0 highly similar to carbamoyl-phosphate synthetase (glutaminase subunit)
1915175..1916086 - 909 16803878 pyrB lmo1838 F COG0540 + H 0 0 highly similar to aspartate carbamoyltransferase
1917581..1918132 - 549 16803880 pyrR lmo1840 F COG2065 H 1 1 highly similar to pyrimidine operon regulatory protein
1963240..1963605 - 363 16803929 - lmo1890 - - H 1 1 similar to conserved hypothetical proteins
2057927..2058418 + 489 16804024 ilvN lmo1985 E COG0440 H 1 2 similar to acetolactate synthase (acetohydroxy-acid synthase) (small subunit)
2160538..2161164 - 624 16804122 - lmo2083 - - H 1 1 lmo2083
2235305..2235742 - 435 16804192 - lmo2153 C COG0716 H 1 1 similar to flavodoxin
2259366..2259713 + 345 16804216 - lmo2177 - - H 1 2 similar to unknown protein
2286839..2287183 + 342 16804236 - lmo2197 C COG1271 H 2 2 lmo2197
2299833..2300177 - 342 16804249 - lmo2210 - - H 1 2 lmo2210
2356325..2359798 - 3471 16804307 addB lmo2268 L COG0210 - H 0 0 similar to ATP-dependent deoxyribonuclease (subunit B)
2360435..2360713 + 276 16804309 comK' lmo2270 K COG1309 - H 2 2 +AY -3.1 4.2 similar to competence transcription factor ComK, N terminal part
2360908..2361141 - 231 16804310 - lmo2271 - - - H 2 2 +HI 3.1 3.1 lmo2271
2361582..2361791 + 207 16804311 - lmo2272 - - - H 1 2 +KV 4.1 -3.4 lmo2272
2361897..2362274 + 375 16804312 - lmo2273 - - - H 1 2 +W 6.2 protein gp30 [Bacteriophage A118]
2362306..2362656 + 348 16804313 - lmo2274 - - - H 1 2 +D 3.7 protein gp29 [Bacteriophage A118]
2362661..2363110 + 447 16804314 - lmo2275 - - H 2 2 Portein gp28 [Bacteriophage A118]
2363135..2363632 + 495 16804315 - lmo2276 - - - H 1 2 +C 3.5 similar to an unknown bacteriophage protein
2363709..2364260 - 549 16804316 - lmo2277 - - - H 2 0 lmo2277
2376721..2377143 - 420 16804328 - lmo2289 - - H 2 1 Protein gp14 [Bacteriophage A118]
2386141..2386680 - 537 16804341 - lmo2302 - - H 2 2 lmo2302
2396454..2397230 - 774 16804363 - lmo2324 K COG3561 - H 1 0 similar to anti-repressor [Bacteriophage A118]
2397212..2397487 - 273 16804364 - lmo2325 - - - H 1 2 +C 7.1 lmo2325
2397800..2398084 - 282 16804366 - lmo2327 - - - H 1 2 +C 3.7 lmo2327
2398287..2398529 - 240 16804367 - lmo2328 K COG1476 - H 1 2 +R 3.7 similar to transcription regulator
2398685..2399161 + 474 16804368 - lmo2329 K COG1396 - H 0 1 similar to a putative repressor protein [Bacteriophage A118]
2399542..2400243 + 699 16804369 - lmo2330 E COG0112 - H 2 0 similar to protein gp33 [Bacteriophage A118]
2400264..2400944 + 678 16804370 - lmo2331 - - - H 2 0 weakly similar to gp32_Bacteriophage A118 protein
2401008..2402366 + 1356 16804371 int lmo2332 L COG1961 - H 0 0 putative integrase [Bacteriophage A118]
2402888..2403235 - 345 16804372 - lmo2334 K COG1396 - H 0 2 similar to transcriptional regulator
2452322..2452906 - 582 16804414 - lmo2376 O COG0652 H 2 1 similar to peptidyl-prolyl cis-trans isomerase
2467643..2467969 - 324 16804431 - lmo2393 H COG0113 H 1 2 similar to B. subtilis YuzD protein
2505425..2505835 + 408 16804475 - lmo2437 R COG3607 H 1 2 lmo2437
2556013..2556510 - 495 16804518 - lmo2480 R COG0110 H 1 1 similar to acetyltransferase
2601632..2601997 - 363 16804561 - lmo2523 L COG0629 H 1 2 similar to single-strand DNA-binding protein
2663619..2664296 - 675 16804621 - lmo2583 T COG0745 H 1 1 similar to two-component response regulator
2744571..2744939 - 366 16804708 - lmo2671 E COG0346 H 1 2 lmo2671
2747427..2748683 + 1254 16804713 - lmo2676 L COG0389 + H 0 0 similar to UV-damage repair protein
2748685..2749497 - 810 16804714 - lmo2677 R COG0596 + H 0 0 similar to hydrolase (esterase)
2749538..2750233 - 693 16804715 - lmo2678 T COG0745 + H 1 0 similar to two components response regulator
2750230..2752920 - 2688 16804716 - lmo2679 T COG2205 + H 1 0 similar to the two components sensor protein kdpD
2752936..2753508 - 570 16804717 kdpC lmo2680 P COG2156 + H 0 0 potassium-transporting atpase c chain
2753523..2755568 - 2043 16804718 kdpB lmo2681 P COG2216 + H 1 0 potassium-transporting atpase b chain
2755580..2757265 - 1683 16804719 kdpA lmo2682 P COG2060 + H 2 0 highly similar to potassium-transporting atpase a chain
2768944..2769273 - 327 16804729 - lmo2692 E COG0347 + H 1 2 lmo2692
2769381..2770007 - 624 16804730 - lmo2693 F COG0125 + H 1 0 similar to thymidylate kinase
2770060..2771439 - 1377 16804731 - lmo2694 E COG1982 + H 1 0 similar to lysine decarboxylase
2771623..2772612 + 987 16804732 - lmo2695 G COG2376 + H 1 0 similar to dihydroxyacetone kinase
2772634..2773230 + 594 16804733 - lmo2696 G COG2376 + H 1 0 similar to hypothetical dihydroxyacetone kinase
2890274..2890666 - 390 16804842 - lmo2805 - - - H 2 0 hypothetical secreted protein
2890779..2891171 - 390 16804843 - lmo2806 - - - H 1 0 hypothetical secreted protein
2891269..2891652 - 381 16804844 - lmo2807 - - - H 2 2 hypothetical secreted protein
2891649..2892032 - 381 16804845 - lmo2808 - - - H 2 2 hypothetical secreted protein
2892057..2892437 - 378 16804846 - lmo2809 - - - H 2 0 hypothetical secreted protein

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