Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Lactococcus lactis (See the Abbreviations used):
Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
16110..16580 + 468 15671993 yabF L16101 F COG0563 H 1 1 HYPOTHETICAL PROTEIN
36847..37428 - 579 15672010 ps104 L36850 - - H 1 2 prophage ps1 protein 04
39303..40097 - 792 15672012 ps106 L39306 - - H 1 2 prophage ps1 protein 06
40101..40430 - 327 15672013 ps107 L40104 - - H 1 2 prophage ps1 protein 07
86620..87072 + 450 15672063 yaiE L86606 - - - H 2 0 +LY 3.6 3.2 transporter
87111..87767 + 654 15672064 yaiF L87100 R COG1266 - H 2 0 +F 3.8 HYPOTHETICAL PROTEIN
87870..88151 - 279 15672065 yaiI L87874 - - - H 0 2 +W 3.5 UNKNOWN PROTEIN
89117..89827 + 708 15672067 yaiH L89118 R COG1266 - H 2 0 HYPOTHETICAL PROTEIN
90253..90705 + 450 15672068 yajA L90239 - - - H 2 0 transporter
92200..92805 - 603 15672071 yajF L92204 R COG1266 - H 2 0 HYPOTHETICAL PROTEIN
94841..95143 - 300 15672074 yajH L94845 - - H 2 2 UNKNOWN PROTEIN
135966..136511 + 543 15672116 ybdI L135900 R COG1266 H 1 1 HYPOTHETICAL PROTEIN
205546..205866 + 318 15672186 ycaF L5525 - - H 1 2 UNKNOWN PROTEIN
209672..211216 + 1542 15672190 ycbA L9639 - - - H 1 0 HYPOTHETICAL PROTEIN
212383..213324 + 939 15672193 ycbD L12335 M COG0451 - H 0 0 UDP-glucose 4-epimerase
213324..214751 + 1425 15672194 ycbK L13324 R COG2244 - H 0 0 polysaccharide biosynthesis export protein
214748..215887 + 1137 15672195 ycbF L14736 M COG0438 - H 0 0 LPS biosynthesis protein
233411..233719 - 306 15672217 ycdE L33417 - - H 1 2 HYPOTHETICAL PROTEIN
258588..259001 + 411 15672242 ycfH L58584 - - H 2 2 HYPOTHETICAL PROTEIN
486329..486871 + 540 15672471 yeiF L86338 - - H 1 1 HYPOTHETICAL PROTEIN
515299..515865 + 564 15672509 yfbJ L115302 - - H 2 1 UNKNOWN PROTEIN
574106..574507 + 399 15672562 yfhF L174076 - - H 1 1 HYPOTHETICAL PROTEIN
583404..583835 - 429 15672573 rmaJ L583407 K COG1846 H 2 1 transcriptional regulator
600267..600620 + 351 15672593 yfjH L200264 - - H 1 2 UNKNOWN PROTEIN
646698..647777 + 1077 15672635 ygeA L46679 - - - H 2 0 +N 3.0 UNKNOWN PROTEIN
647939..648208 + 267 15672636 ygeB L47917 - - - H 1 2 +N 3.4 UNKNOWN PROTEIN
648543..648710 + 165 15672637 ygeC L48473 - - - H 1 2 UNKNOWN PROTEIN
648976..649746 + 768 15672638 ygeD L48975 - - - H 2 0 +N 3.2 UNKNOWN PROTEIN
652010..652681 - 669 15672641 ygfA L52030 R COG1136 - H 0 0 ABC transporter ATP-binding protein
652684..653757 - 1071 15672642 ygfB L52704 R COG0577 - H 1 0 +IS 3.0 3.1 ABC transporter permease protein
653769..654338 - 567 15672643 ygfC L53789 K COG1309 - H 1 0 transcriptional regulator
771778..772476 - 696 15672743 yhhC L171802 M COG1346 H 1 1 conserved hypothetical protein
863010..863438 + 426 15672827 yigC L862989 P COG1393 H 1 2 HYPOTHETICAL PROTEIN
906609..906941 + 330 15672865 yjaF L106356 R COG2151 H 1 2 conserved hypothetical protein
909021..909365 + 342 15672867 yjaH L108747 K COG1316 H 1 1 UNKNOWN PROTEIN
935988..936896 + 906 15672894 tagL L135727 - - - H 1 0 +S 3.4 exopolysaccharide biosynthesis protein
937270..937692 + 420 15672896 yjdJ L136943 P COG1226 - H 1 0 potassium channel protein
937689..939089 + 1398 15672897 tagH L137446 G COG1134 - H 0 0 teichoic acid ABC transporter ATP binding protein
939920..941362 + 1440 15672899 yjeA L139656 - - - H 2 0 UNKNOWN PROTEIN
941343..944234 + 2889 15672900 tagZ L141091 M COG0463 - H 0 0 teichoic acid biosynthesis protein
944247..944801 + 552 15672901 tagY L143992 M COG1887 - H 1 1 teichoic acid biosynthesis protein
944794..946425 + 1629 15672902 yjeD L144551 - - - H 2 0 UNKNOWN PROTEIN
946470..948893 + 2421 15672903 tagX L146188 M COG1887 - H 1 0 teichoic acid biosynthesis protein
948942..949673 + 729 15672904 yjeF L148651 M COG0438 - H 0 0 lipopolysaccharide biosynthesis protein
949844..950833 + 987 15672905 yjeG L149469 - - - H 1 0 UNKNOWN PROTEIN
950851..951291 + 438 15672906 tagD2 L150584 M COG0615 - H 1 0 glycerol-3-phosphate cytidyltransferase (2.7.7.39)
951328..951759 + 429 15672907 yjfB L151067 - - - H 2 0 +K 3.3 UNKNOWN PROTEIN
951780..952967 + 1185 15672908 tagF L151480 M COG1887 - H 0 0 +Y 3.3 teichoic acid biosynthesis protein F
952957..954072 + 1113 15672909 tagB L152603 M COG1887 - H 1 0 teichoic acid biosynthesis protein B
954083..955003 + 918 15672910 yjfE L153822 K COG1316 - H 0 0 transcription regulator
976153..976557 + 402 15672933 yjhH L175880 - - H 2 2 UNKNOWN PROTEIN
996445..996975 - 528 15672951 yjjG L196206 J COG3557 H 1 2 HYPOTHETICAL PROTEIN
1072934..1073326 + 390 15673043 ykhE L72684 P COG1393 H 1 1 HYPOTHETICAL PROTEIN
1076402..1076767 + 363 15673046 ykhH L76119 - - H 2 2 UNKNOWN PROTEIN
1203477..1204619 + 1140 15673168 mae L3227 C COG0281 + H 0 0 malate oxidoreductase (EC 1.1.1.38)
1206765..1207805 + 1038 15673170 citC L0038 C COG3053 + H 1 2 acetate-SH-citrate lyase ligase (EC 6.2.1.22)
1207795..1208085 + 288 15673171 citD L0039 C COG3052 + H 2 2 +A 3.3 citrate lyase acyl-carrier protein (EC 4.1.3.6)
1208087..1209001 + 912 15673172 citE L0040 G COG2301 + H 2 2 +M 3.1 citrate lyase beta chain (EC 4.1.3.6)
1208991..1210529 + 1536 15673173 citF L0041 C COG3051 + H 2 0 citrate lyase alpha chain (EC 4.1.3.6)
1213381..1213527 + 144 15673175 ymbD L13030 - - + H 1 2 +M 7.1 UNKNOWN PROTEIN
1349213..1350154 - 939 15673298 mtsA L148957 P COG0803 - H 1 0 manganese ABC transporter substrate binding protein
1350147..1350992 - 843 15673299 mtsC L149891 P COG1108 - H 1 0 +I 3.4 manganese ABC transporter permease protein
1351000..1351713 - 711 15673300 mtsB L150744 P COG1121 - H 0 0 manganese ABC transporter ATP binding protein
1352482..1352715 - 231 15673302 ynfD L152227 - - - H 1 2 HYPOTHETICAL PROTEIN
1352843..1355983 - 3138 15673303 sbcC L152588 L COG0419 - H 1 0 ATP-dependent dsDNA exonuclease
1355986..1357158 - 1170 15673304 sbcD L0327 L COG0420 - H 0 0 exonuclease SbcD
1357310..1358248 - 936 15673305 panE L157055 H COG1893 - H 0 0 ketopantoate reductase (EC 1.1.1.169)
1358448..1358867 - 417 15673306 ynfG L158193 P COG1393 - H 1 0 HYPOTHETICAL PROTEIN
1416048..1416827 - 777 15673361 pi305 L15795 M COG0791 H 1 1 prophage pi3 protein 05, muramidase
1469252..1469554 - 300 15673429 yogL L69000 K COG1396 H 2 2 transcriptional regulator
1511212..1511631 - 417 15673464 rmaE L110960 K COG1846 H 1 1 transcriptional regulator
1671413..1672054 - 639 15673608 kdgA L0022 G COG0800 H 1 1 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
1744680..1745237 + 555 15673670 yreC L128689 - - H 2 2 UNKNOWN PROTEIN
1750127..1750429 + 300 15673676 yrfA L133446 K COG0640 H 1 2 transcription regulator
1763289..1764101 + 810 15673689 ptnC L146623 G COG3715 H 2 1 mannose-specific PTS system component IIC (EC 2.7.1.69)
1828378..1829031 - 651 15673751 atpB L11729 C COG0356 H 1 1 ATP synthase subunit a (EC 3.6.1.34)
1843755..1844117 + 360 15673766 yseC L27103 - - H 2 2 UNKNOWN PROTEIN
1847783..1848148 - 363 15673771 nifU L31137 C COG0822 H 1 2 NifU protein
1929364..1930551 - 1185 15673843 tuf L0371 J COG0050 H 2 1 elongation factor Tu
1936369..1936959 - 588 15673849 ytdE L119731 S COG1799 H 1 1 HYPOTHETICAL PROTEIN
1946839..1947243 - 402 15673859 rmeA L0246 K COG0789 H 1 2 transcriptional regulator
2017986..2018348 - 360 15673920 ps306 L1417 - - H 1 2 prophage ps3 protein 06
2052690..2053067 + 375 15673959 rmeD L35965 K COG0789 H 1 1 transcriptional regulator
2185338..2185622 - 282 15674099 yviH L168783 - - - H 0 2 +QS 3.1 3.1 HYPOTHETICAL PROTEIN
2186070..2186366 - 294 15674101 yviJ L169515 - - - H 1 2 HYPOTHETICAL PROTEIN
2186338..2186769 - 429 15674102 comGD L169783 - - - H 2 0 competence protein ComGD
2186729..2187112 - 381 15674103 comGC L0315 - - - H 2 0 competence protein ComGC
2187126..2188199 - 1071 15674104 comGB L0314 N COG1459 - H 0 0 +L 3.7 competence protein ComGB
2232776..2233273 - 495 15674138 ywdA L16221 - - H 2 1 UNKNOWN PROTEIN
2252385..2252729 - 342 15674158 ywfC L35832 S COG2315 H 1 2 HYPOTHETICAL PROTEIN

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