Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Listeria innocua (See the Abbreviations used):
Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
66267..66881 + 612 16799139 - lin0060 - - - H 2 0 lin0060
67522..67845 + 321 16799140 - lin0061 - - - H 2 2 hypothetical protein
68014..68646 + 630 16799141 - lin0062 - - - H 2 0 hypothetical protein
70428..70817 + 387 16799142 - lin0064 - - - H 2 2 +AN -3.0 3.4 lin0064
70955..71365 + 408 16799143 - lin0065 - - - H 2 0 +K 3.2 lin0065
71623..71946 + 321 16799144 - lin0066 - - - H 1 2 +Y 3.3 lin0066
89438..89839 + 399 16799173 - lin0095 - - H 1 1 highly similar to gp59 [Bacteriophage A118]
100342..100680 + 336 16799191 - lin0113 - - H 1 2 Protein gp10 [Bacteriophage A118]
101090..101527 + 435 16799193 - lin0115 - - H 2 2 major tail shaft protein [Bacteriophage A118]
157383..157799 + 414 16799240 lmaC lin0163 - - H 1 1 similar to Antigen C
178422..178841 + 417 16799265 - lin0188 - - H 2 1 lin0188
200225..200614 + 387 16799284 - lin0207 - - H 1 1 similar to B. subtilis YabA protein
232017..232325 + 306 16799312 - lin0235 M COG2088 H 1 2 similar to B. subtilis SpoVG protein
281929..282543 + 612 16799347 cysE lin0270 E COG1045 H 2 1 similar to serine O-acetyltransferase
299779..301239 + 1458 16799365 - lin0288 G COG2723 + H 1 0 similar to phospho-beta-glucosidase
304380..304796 + 414 16799368 - lin0291 K COG1846 + H 1 2 +Q 4.3 similar to transcriptional regulators
304803..305762 + 957 16799369 - lin0292 E COG0346 + H 1 0 similar to other proteins
305833..306468 + 633 16799370 - lin0293 G COG0406 + H 0 0 similar to phosphoglycerate mutase
337002..337481 + 477 16799398 - lin0321 S COG1576 H 2 2 conserved hypothetical protein, highly similar to B. subtilis YydA proteinYyd
339443..340081 + 636 16799401 - lin0324 G COG0477 H 1 2 lin0324
342057..343370 - 1311 16799403 - lin0326 G COG1455 H 1 1 similar to PTS beta-glucoside-specific enzyme IIC component
345066..345407 - 339 16799406 - lin0329 G COG1447 H 1 2 similar to PTS beta-glucoside-specific enzyme IIA component
345892..346443 + 549 16799408 - lin0331 - - - H 0 0 +K 3.2 putative secreted, lysin rich protein
346543..347760 - 1215 16799409 - lin0332 G COG0477 - H 2 0 similar to putative permeases
349128..349514 - 384 16799411 - lin0334 - - - H 2 0 lin0334
349628..350773 + 1143 16799412 - lin0335 - - - H 2 0 lin0335
350788..351216 + 426 16799413 - lin0336 - - - H 1 0 lin0336
351479..353140 + 1659 16799414 - lin0337 S COG1479 - H 2 0 similar to unknown protein
353186..353986 + 798 16799415 - lin0338 - - - H 2 0 lin0338
354060..354845 + 783 16799416 - lin0339 S COG3394 + H 2 2 similar to unknown protein
355068..355742 + 672 16799417 - lin0340 K COG0819 + H 2 2 similar to thiamin biosynthesis protein
355735..356544 + 807 16799418 - lin0341 H COG2145 + H 2 2 +A 3.2 similar to hydroxyethylthiazole kinase (ThiM)
356541..357344 + 801 16799419 - lin0342 H COG0351 + H 2 0 similar to phosphomethylpyrimidine kinase (ThiD)
357341..357985 + 642 16799420 - lin0343 H COG0352 + H 2 2 similar to thiamin-phosphate pyrophosphorylase (ThiE)
358011..359426 - 1413 16799421 - lin0344 G COG2723 + H 1 0 similar to phospho-beta-glucosidase
407973..408392 + 417 16799473 - lin0396 - - H 1 2 lin0396
460934..461503 + 567 16799527 - lin0451 R COG0110 H 1 2 similar to acetyltransferase
510674..511153 + 477 16799560 - lin0485 S COG3708 H 1 1 lin0485
539272..539640 - 366 16799593 - lin0518 S COG3759 H 2 2 similar to unknown protein
614385..614843 - 456 16799661 - lin0586 S COG3610 H 1 2 lin0586
642352..642696 - 342 16799688 - lin0613 G COG0477 H 1 2 similar to B. subtilis YvlA protein
697208..697516 - 306 16799741 - lin0666 S COG0599 H 1 2 similar to unknown proteins
826700..827422 + 720 16799875 - lin0801 K COG3279 H 2 1 similar to two-component response regulators
899100..899411 + 309 16799937 - lin0863 - - - H 0 1 lin0863
899647..900486 - 837 16799938 - lin0864 - - - H 2 0 similar to transcription regulator
900943..901338 + 393 16799939 - lin0865 - - - H 0 2 +Y 4.4 hypothetical protein
901382..902053 + 669 16799940 - lin0866 R COG1136 - H 2 0 similar to ABC transporters, ATP-binding protein homologue
902046..903311 + 1263 16799941 - lin0867 - - - H 2 0 lin0867
903326..904462 + 1134 16799942 - lin0868 - - - H 2 0 +Y 3.4 lin0868
920574..920921 + 345 16799960 - lin0887 T COG2337 H 1 2 similar to B. subtilis YdcE protein
1075790..1076992 + 1200 16800128 - lin1059 D COG0772 - H 0 0 similar to cell-division protein RodA and FtsW
1080860..1081753 + 891 16800130 - lin1061 P COG0614 - H 0 0 similar to metal binding protein (ABC transporter)
1082035..1082838 + 801 16800131 - lin1062 M COG1682 - H 1 0 highly similar to teichoic acid translocation permease protein TagG
1082851..1083858 + 1005 16800132 - lin1063 G COG1134 - H 0 0 similar to teichoic acid translocation ATP-binding protein TagH (ABC transporter)
1084046..1086370 + 2322 16800133 - lin1064 N COG1705 - H 1 0 similar to autolysin (amidase)
1086423..1088429 - 2004 16800134 - lin1065 - - - H 1 0 lin1065
1088674..1089663 + 987 16800135 - lin1066 M COG0463 - H 0 0 similar to dolichol phosphate mannose synthase
1089669..1091759 + 2088 16800136 - lin1067 - - - H 2 0 lin1067
1091847..1094171 + 2322 16800137 - lin1068 M COG0463 - H 1 0 similar to hypothetical protein 3 (capsulation locus) of Haemophilus influenzae
1094168..1095178 + 1008 16800138 - lin1069 - - - H 2 0 lin1069
1096342..1097055 + 711 16800140 - lin1071 I COG1211 - H 1 0 similar to CDP-ribitol pyrophosphorylase
1105194..1105598 + 402 16800149 - lin1080 G COG1440 H 1 2 similar to PTS system, cellobiose-specific IIB component (cel A)
1108735..1109385 + 648 16800152 - lin1083 - - - H 1 0 lin1083
1110321..1111718 + 1395 16800155 - lin1086 - - - H 1 0 lin1086
1111731..1112150 + 417 16800156 - lin1087 - - - H 2 2 lin1087
1112236..1112709 + 471 16800157 - lin1088 - - - H 2 1 +N 3.8 lin1088
1112699..1113136 + 435 16800158 - lin1089 - - - H 1 1 +T -3.1 lin1089
1114077..1114379 + 300 16800160 - lin1091 - - H 1 2 lin1091
1114550..1115002 + 450 16800161 - lin1092 K COG0454 H 1 1 similar to E. coli YjaB protein
1245851..1246246 - 393 16800299 - lin1230 K COG1396 - H 1 2 similar to transcriptional regulator (phage-related)
1246563..1247978 - 1413 16800300 - lin1231 L COG1961 - H 2 0 similar to site-specific recombinase for integration and excision [bacteriophage phi-105]
1248055..1248726 - 669 16800301 - lin1232 - - - H 2 0 similar to unknown protein
1248769..1249188 - 417 16800302 - lin1233 E COG2856 - H 1 1 similar to bacteriophage phi-105 ORF2 protein
1249205..1249633 - 426 16800303 - lin1234 K COG1396 - H 1 1 similar to immunity repressor [bacteriophage phi-105]
1250055..1250579 + 522 16800305 - lin1236 - - - H 2 0 lin1236
1250592..1250750 + 156 16800306 - lin1237 - - - H 1 2 +CEK 4.6 3.2 3.2 lin1237
1265000..1265425 + 423 16800328 - lin1259 - - - H 0 2 similar to protein gp66 [Bacteriophage A118]
1265438..1266205 + 765 16800329 - lin1260 S COG3646 - H 0 0 similar to probable antirepressor - Bacillus subtilis phage SPBc2
1266855..1267334 + 477 16800330 - lin1261 - - - H 0 2 lin1261
1288196..1288603 + 405 16800354 - lin1286 - - H 1 1 similar to a B. subtilis PBSX prophage protein
1345653..1346084 - 429 16800417 - lin1349 - - H 2 1 lin1349
1370819..1371358 + 537 16800441 - lin1373 H COG0212 - H 1 0 similar to 5-formyltetrahydrofolate cyclo-ligase
1371457..1372995 + 1536 16800442 - lin1374 R COG0705 - H 0 0 similar to B. subtilis yqgP
1373008..1373220 + 210 16800443 - lin1375 - - - H 2 2 similar to B. subtilis yqgQ
1374384..1375436 + 1050 16800445 - lin1377 - - - H 2 0 similar to B. subtilis YqgU protein
1375452..1375769 - 315 16800446 - lin1378 - - - H 1 2 weakly similar to B. subtilis comG operon protein 7 (comGG)
1375769..1376233 - 462 16800447 - lin1379 - - - H 2 1 similar to B. subtilis comG operon protein 6
1376196..1376480 - 282 16800448 - lin1380 N COG2165 - H 2 2 +CQS 3.7 4.0 3.2 similar to comG operon protein 5 (comGE)
1376473..1376895 - 420 16800449 - lin1381 - - - H 1 2 +T 4.1 similar to comG operon protein 4 (comGD)
1376892..1377215 - 321 16800450 - lin1382 - - - H 1 2 +S 3.9 similar to B. subtilis comG operon protein 3
1377229..1378260 - 1029 16800451 comGB lin1383 N COG1459 - H 2 0 similar to B. subtilis comG operon protein 2
1378238..1379260 - 1020 16800452 comGA lin1384 N COG2804 - H 1 0 similar to B. subtilis comG operon protein 1
1449388..1449900 - 510 16800518 - lin1450 - - H 2 2 lin1450
1469406..1469789 - 381 16800537 - lin1469 S COG2315 H 1 2 similar to unknown proteins
1633423..1634328 + 903 16800691 - lin1623 L COG1961 H 2 2 similar to site-specific recombinase tnpX - Clostridium perfringens transposon Tn4451 (N terminal part)
1634365..1635084 + 717 16800692 - lin1624 L COG0419 H 2 2 similar to site-specific recombinase tnpX - Clostridium perfringens transposon Tn4451
1720809..1721171 - 360 16800779 - lin1711 - - H 2 1 lin1711
1758382..1758906 - 522 16800828 - lin1760 - - - H 0 0 similar to protein gp43 [Bacteriophage A118]
1758978..1759202 - 222 16800829 - lin1761 K COG1396 - H 1 2 similar to transcription regulator
1759363..1759803 + 438 16800830 - lin1762 K COG1396 - H 2 2 +S 4.3 similar to immunity repressor protein - Bacillus phage phi-105
1759826..1760248 + 420 16800831 - lin1763 E COG2856 H 1 2 similar to ORF2 [bacteriophage phi-105]
1760284..1760832 + 546 16800832 - lin1764 - - - H 1 0 Listeria prophage protein
1760914..1762089 + 1173 16800833 - lin1765 L COG0582 - H 1 0 similar to integrase
1764158..1764535 - 375 16800836 - lin1768 - - H 2 1 similar to Antigen C
1964016..1967228 - 3210 16801015 pyrAB lin1949 E COG0458 + H 0 0 highly similar to carbamoyl-phosphate synthetase (catalytic subunit)
1967221..1968312 - 1089 16801016 pyrAa lin1950 E COG0505 + H 0 0 highly similar to carbamoyl-phosphate synthetase (glutaminase subunit)
1968309..1969589 - 1278 16801017 pyrC lin1951 F COG0044 + H 1 0 highly similar to dihydroorotase
2034504..2034908 - 402 16801086 - lin2020 G COG1803 H 1 2 similar to methylglyoxal synthase
2203938..2204399 - 459 16801249 - lin2184 R COG0802 H 1 2 similar to unknown proteins
2345780..2346124 - 342 16801377 - lin2313 - - H 1 2 lin2313
2351577..2351939 + 360 16801384 - lin2320 D COG1196 H 1 1 similar to unknown protein
2378893..2379282 - 387 16801406 - lin2343 K COG1725 H 1 1 similar to transcriptional regulators (GntR family)
2396393..2397295 - 900 16801428 - lin2365 S COG1284 - H 0 0 similar to unknown proteins
2397761..2398609 - 846 16801430 - lin2367 Q COG0179 - H 0 0 similar to unknown proteins
2398610..2402317 - 3705 16801431 - lin2368 L COG1074 - H 0 0 similar to ATP-dependent deoxyribonuclease (subunit A)
2402319..2405792 - 3471 16801432 addB lin2369 L COG0210 - H 0 0 similar to ATP-dependent deoxyribonuclease (subunit B)
2406428..2406718 + 288 16801434 comK' lin2371 - - - H 2 2 +AS -3.0 4.2 similar to competence transcription factor ComK, N terminal part
2406902..2407135 - 231 16801435 - lin2372 - - - H 2 2 +H 3.0 lin2372
2407382..2408278 - 894 16801436 - lin2373 - - - H 2 0 similar to AbiD phage protein
2441522..2441773 - 249 16801483 - lin2421 K COG1395 - H 2 2 +K 3.8 lin2421
2442784..2443002 + 216 16801485 - lin2423 - - - H 1 2 +CM 11.2 3.5 similar to Bacteriophage A118 protein gp34
2443018..2443740 + 720 16801486 - lin2424 - - - H 0 0 similar to protein gp33 [Bacteriophage A118]
2443761..2444468 + 705 16801487 - lin2425 - - - H 2 0 lin2425
2444533..2445891 + 1356 16801488 int lin2426 L COG1961 - H 0 0 putative integrase [Bacteriophage A118]
2446397..2446744 - 345 16801490 - lin2428 K COG1396 - H 2 2 similar to transcriptional regulator
2501844..2502428 - 582 16801537 - lin2475 O COG0652 H 1 1 similar to peptidyl-prolyl cis-trans isomerase
2552493..2552903 + 408 16801593 - lin2531 R COG3607 H 1 2 lin2531
2598965..2599321 - 354 16801632 - lin2570 - - H 1 2 similar to Orf51 [bacteriophage bIL285]
2606089..2606463 - 372 16801642 - lin2580 - - H 1 2 similar to bacteriophage protein
2616023..2616361 - 336 16801655 - lin2593 - - H 2 2 Hypothetical gene
2622328..2622519 - 189 16801667 - lin2605 - - - H 1 2 +T -3.1 lin2605
2622586..2622789 + 201 16801668 - lin2606 - - - H 1 2 +D 3.2 lin2606
2623530..2623982 + 450 16801670 - lin2608 - - - H 2 0 +Y 3.5 similar to protein gp35 from Bacteriophage A118
2624033..2624521 + 486 16801671 - lin2609 - - - H 2 0 lin2609
2624653..2625807 + 1152 16801672 - lin2610 L COG0582 - H 2 0 similar to integrases
2626101..2627537 - 1434 16801673 - lin2611 S COG3397 - H 0 0 similar to chitinase and chitin binding protein
2747511..2748188 - 675 16801789 - lin2728 T COG0745 H 1 2 similar to two-component response regulator
2756539..2757186 - 645 16801796 - lin2735 - - H 2 2 lin2735
2768472..2768930 - 456 16801802 - lin2741 - - H 1 1 lin2741
2828578..2829630 - 1050 16801874 - lin2813 E COG1063 + H 0 0 +C 3.2 similar to sorbitol dehydrogenase
2831338..2831802 - 462 16801877 - lin2816 G COG1762 + H 1 1 similar to PTS system galactitol-specific enzyme IIA component
2831836..2833905 - 2067 16801878 - lin2817 G COG1762 + H 1 0 similar to transcriptional antiterminator (BglG family)
2835161..2835523 - 360 16801880 - lin2819 S COG2315 + H 1 2 conserved hypothetical protein
2836358..2836813 + 453 16801882 - lin2821 G COG0698 + H 2 1 similar to ribose 5-phosphate epimerase
2837012..2837353 + 339 16801883 - lin2822 - - H 1 2 lin2822
2837366..2838622 + 1254 16801884 - lin2823 L COG0389 + H 1 0 similar to UV-damage repair protein
2838831..2839436 - 603 16801885 - lin2825 R COG0596 + H 0 0 similar to hydrolase (esterase) (truncated, N-terminal end)
2839477..2840172 - 693 16801886 - lin2826 T COG0745 + H 2 0 similar to two components response regulator
2840169..2842859 - 2688 16801887 - lin2827 T COG2205 + H 1 0 similar to the two components sensor protein kdpD
2842878..2843450 - 570 16801888 kdpC lin2828 P COG2156 + H 1 0 potassium-transporting atpase c chain
2843465..2845510 - 2043 16801889 kdpB lin2829 P COG2216 + H 0 0 potassium-transporting atpase b chain
2845522..2847207 - 1683 16801890 kdpA lin2830 P COG2060 + H 2 0 highly similar to potassium-transporting atpase a chain
2949085..2949531 - 444 16801988 - lin2929 G COG1762 + H 1 0 similar to phosphotransferase system mannitol-specific enzyme IIA
2949544..2950200 - 654 16801989 - lin2930 R COG0637 + H 0 0 similar to phosphatase
2950263..2951669 - 1404 16801990 - lin2931 G COG2213 + H 0 0 similar to phosphotransferase system mannitol-specific enzyme IIBC
2951703..2952704 - 999 16801991 - lin2932 R COG0673 + H 0 0 similar to dehydrogenase
2952724..2953419 - 693 16801992 - lin2933 G COG3010 + H 0 0 similar to a putative N-acetylmannosamine-6-phosphate epimerase
2953621..2954337 - 714 16801993 gidB lin2934 M COG0357 + H 1 0 GidB protein
2956412..2956798 - 384 16801996 - lin2937 - - - H 1 0 hypothetical secreted protein
2956910..2957302 - 390 16801997 - lin2938 - - - H 1 1 hypothetical secreted protein
2957430..2957807 - 375 16801998 - lin2939 - - - H 2 1 hypothetical secreted protein
2958038..2959000 - 960 16801999 - lin2940 - - - H 2 0 similar to abortive phage resistance mechanism [Lactococcus lactis]
2959004..2960995 - 1989 16802000 - lin2941 - - - H 2 0 lin2941
2967155..2967682 - 525 16802006 - lin2947 K COG1309 H 1 2 similar to transcriptional regulator

    Return to the HGT-DB Homepage     Go back