Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Halobacterium sp. NRC-1 (See the Abbreviations used):


Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
11478..12614 - 1134 15789349 VNG0013C VNG0013C L COG0675 - H 1 0 Vng0013c
12978..13187 + 207 15789350 VNG0014C VNG0014C E COG0065 - H 1 0 +W 3.6 Vng0014c
13809..14180 - 369 15789352 VNG0016H VNG0016H - - - H 1 0 Vng0016h
14484..14780 + 294 15789353 VNG0017H VNG0017H - - - H 2 0 Vng0017h
14868..15131 + 261 15789354 VNG0018H VNG0018H - - - H 2 0 +M 3.0 Vng0018h
15419..16051 - 630 15789356 VNG0020H VNG0020H - - - H 2 0 Vng0020h
16342..17706 + 1362 15789357 VNG0021H VNG0021H L COG3436 - H 1 0 Vng0021h
18357..18902 + 543 15789358 VNG0022H VNG0022H - - - H 2 0 +T 3.2 Vng0022h
18895..19530 + 633 15789359 VNG0023H VNG0023H - - - H 2 0 Vng0023h
19703..20023 - 318 15789360 VNG0024H VNG0024H - - - H 1 0 Vng0024h
20219..20482 - 261 15789361 VNG0025H VNG0025H - - - H 2 0 +GKQ -3.1 3.8 5.0 Vng0025h
20533..21456 - 921 15789362 VNG0026C VNG0026C L COG0675 - H 1 0 Vng0026c
22103..22750 - 645 15789363 VNG0027H VNG0027H - - - H 1 0 Vng0027h
23336..23890 + 552 15789364 VNG0028C VNG0028C L COG3415 - H 2 0 Vng0028c
24109..24564 - 453 15789365 VNG0029H VNG0029H - - - H 2 0 +CGW 5.9 3.6 6.2 Vng0029h
26201..26596 + 393 15789366 VNG0030H VNG0030H - - - H 2 0 Vng0030h
26648..29008 + 2358 15789367 VNG0031H VNG0031H - - - H 2 0 Vng0031h
29046..29429 + 381 15789368 VNG0032H VNG0032H - - - H 2 0 +T 4.0 Vng0032h
29476..29913 - 435 15789369 VNG0033H VNG0033H - - - H 1 0 +H 4.7 Vng0033h
30356..31168 - 810 15789371 VNG0035H VNG0035H L COG3039 - H 1 0 Vng0035h
31838..32086 + 246 15789372 VNG0037H VNG0037H - - - H 2 0 Vng0037h
32101..32355 + 252 15789373 VNG0038H VNG0038H - - - H 2 0 Vng0038h
32555..32890 - 333 15789374 VNG0039H VNG0039H - - - H 2 0 Vng0039h
33182..33628 - 444 15789375 VNG0040C VNG0040C K COG0640 - H 2 0 Vng0040c
33610..33915 - 303 15789376 VNG0041C VNG0041C - - - H 1 0 +W 3.2 Vng0041c
34651..35931 - 1278 15789377 ntp VNG0042G L COG0675 - H 2 0 neutral proteinase
36321..36713 + 390 15789378 VNG0043H VNG0043H L COG1943 - H 2 0 Vng0043h
36715..37971 + 1254 15789379 VNG0044H VNG0044H L COG0675 - H 1 0 Vng0044h
38017..39432 + 1413 15789380 VNG0045C VNG0045C L COG1474 - H 2 0 Vng0045c
39611..40903 - 1290 15789381 ugd VNG0046G M COG1004 - H 1 0 UDP-glucose dehydrogenase
41880..42659 + 777 15789383 VNG0049H VNG0049H Q COG0500 - H 2 0 +I 4.5 Vng0049h
42707..44149 + 1440 15789384 VNG0050C VNG0050C R COG2244 - H 2 0 +I 4.3 Vng0050c
44245..45456 - 1209 15789385 rfbU1 VNG0051G M COG0438 - H 2 0 LPS biosynthesis
47199..48473 - 1272 15789386 VNG0052H VNG0052H L COG3385 - H 2 0 Vng0052h
48767..49222 + 453 15789387 VNG0053H VNG0053H - - - H 2 0 Vng0053h
49352..49972 - 618 15789388 VNG0054H VNG0054H - - - H 2 0 Vng0054h
49985..50251 + 264 15789389 VNG0055H VNG0055H - - - H 2 0 +W 3.9 Vng0055h
50564..51970 - 1404 15789390 VNG0056H VNG0056H L COG3436 - H 1 0 Vng0056h
53192..54367 + 1173 15789391 VNG0057H VNG0057H - - - H 2 0 +I 3.0 Vng0057h
54696..55745 - 1047 15789392 VNG0058H VNG0058H - - - H 2 0 +F 3.3 Vng0058h
56287..57561 + 1272 15789393 VNG0059H VNG0059H L COG3385 - H 1 0 Vng0059h
57660..58661 - 999 15789394 lpg VNG0060G M COG0438 - H 2 0 LPS glycosyltransferase
58827..60182 + 1353 15789395 VNG0061C VNG0061C P COG3119 - H 2 0 Vng0061c
60609..61625 - 1014 15789396 lpb VNG0062G M COG0438 - H 1 0 LPS biosynthesis protein
61700..62686 - 984 15789397 galE2 VNG0063G M COG0451 - H 1 0 UDP-glucose 4-epimerase
62927..63643 + 714 15789398 graD3 VNG0064G M COG1209 - H 2 0 glucose-1-phosphate thymidylyltransferase
63881..64810 + 927 15789399 gmd VNG0065G M COG0451 - H 0 0 GDP-D-mannose dehydratase
65203..65472 + 267 15789401 VNG0067H VNG0067H - - - H 2 0 Vng0067h
65671..65832 + 159 15789402 VNG0068H VNG0068H - - - H 2 1 Vng0068h
66241..66534 + 291 15789404 VNG0070H VNG0070H - - - H 2 0 +KY 3.3 3.1 Vng0070h
67908..68204 + 294 15789406 VNG0073C VNG0073C M COG0451 - H 0 0 Vng0073c
68290..68514 + 222 15789407 VNG0075H VNG0075H - - - H 1 0 Vng0075h
69300..69419 - 117 15789408 VNG0076H VNG0076H - - - H 2 0 +MT 8.9 -3.1 Vng0076h
69967..70749 + 780 15789409 VNG0077H VNG0077H - - - H 1 0 +T 4.2 Vng0077h
89160..90587 + 1425 15789430 rmeS VNG0107G L COG0732 - H 2 0 type I restriction modification enzyme, S subunit
93634..94359 + 723 15789432 VNG0110C VNG0110C R COG1451 - H 1 0 Vng0110c
96010..96543 - 531 15789433 VNG0112H VNG0112H - - - H 1 0 +W 3.8 Vng0112h
100891..101715 - 822 15789436 VNG0116H VNG0116H - - - H 2 0 +K 3.0 Vng0116h
102034..102309 - 273 15789437 VNG0117H VNG0117H - - - H 0 0 Vng0117h
102309..102692 - 381 15789438 VNG0118H VNG0118H - - - H 0 0 Vng0118h
102863..103021 - 156 15789439 VNG0119H VNG0119H - - - H 1 0 +MT 4.2 3.9 Vng0119h
103021..103146 - 123 15789440 VNG0120H VNG0120H - - - H 2 0 +HN 3.9 4.3 Vng0120h
116234..116758 + 522 15789455 VNG0139H VNG0139H - - - H 2 0 +I 5.7 Vng0139h
116881..117093 + 210 15789456 VNG0140H VNG0140H - - - H 1 0 +NR 4.2 6.3 Vng0140h
117313..117579 - 264 15789457 VNG0141H VNG0141H - - - H 1 0 +I 3.7 Vng0141h
117867..118271 - 402 15789458 VNG0142C VNG0142C K COG3355 - H 1 0 +Q 3.7 Vng0142c
118287..118700 - 411 15789459 VNG0143H VNG0143H - - - H 2 0 +CS 5.8 3.2 Vng0143h
119518..119754 + 234 15789461 VNG0146H VNG0146H - - - H 0 0 +L 3.7 Vng0146h
119759..120226 - 465 15789462 VNG0147C VNG0147C K COG0864 - H 1 0 Vng0147c
120254..120364 - 108 15789463 VNG0148H VNG0148H - - - H 0 0 +C 5.4 Vng0148h
175115..175471 + 354 15789511 VNG0207H VNG0207H - - - H 2 0 Vng0207h
175471..175920 + 447 15789512 VNG0208H VNG0208H - - - H 2 0 +HW 3.4 5.5 Vng0208h
175913..176947 + 1032 15789513 VNG0209H VNG0209H L COG0582 - H 2 0 Vng0209h
177093..177296 - 201 15789514 VNG0210H VNG0210H - - - H 2 0 +I 3.0 Vng0210h
177587..178354 + 765 15789515 VNG0212H VNG0212H - - - H 2 0 Vng0212h
178317..179321 + 1002 15789516 VNG0213H VNG0213H - - - H 1 0 Vng0213h
179707..180366 - 657 15789517 VNG0214C VNG0214C - - - H 2 0 +K 3.8 Vng0214c
180916..183489 - 2571 15789518 VNG0215C VNG0215C R COG3378 - H 2 0 Vng0215c
183649..183858 - 207 15789519 VNG0216H VNG0216H - - - H 2 0 +KN 3.0 4.3 Vng0216h
184345..184965 + 618 15789520 VNG0217H VNG0217H - - - H 2 0 +K 4.4 Vng0217h
725699..726469 - 768 16554479 flaH VNG0950Gm N COG2874 - H 0 0 Predicted ATPase involved in flagella biogenesis
726466..726921 - 453 16554480 - VNG0950a N COG3354 - H 1 0 +S 4.6 Putative flagellar protein G
726922..727359 - 435 15790074 VNG0953C VNG0953C N COG3353 - H 1 0 +NT 4.5 3.1 Vng0953c
728962..729432 - 468 15790076 fapE VNG0955G N COG3351 - H 0 0 flagella-related protein E
731395..731634 - 237 15790078 VNG0959H VNG0959H - - - H 1 0 +C 3.4 Vng0959h
731799..732380 + 579 15790079 flaB1 VNG0960G N COG1681 - H 1 0 +N 3.8 flagellin B1 precursor
732464..732982 + 516 15790080 flaB2 VNG0961G N COG1681 - H 1 0 +N 5.0 flagellin B2 precursor
749392..751398 + 2004 15790098 VNG0985H VNG0985H - - - H 2 0 Vng0985h
752276..752803 + 525 15790099 VNG0986H VNG0986H - - - H 2 0 +CK 5.0 3.4 Vng0986h
753131..753547 + 414 15790100 VNG0987H VNG0987H - - - H 2 0 +CNS 3.2 5.4 3.5 Vng0987h
754149..754391 + 240 15790101 VNG0988H VNG0988H S COG3815 - H 2 1 +FIL 3.1 5.7 4.5 Vng0988h
754459..755481 - 1020 15790102 VNG0989C VNG0989C L COG0582 - H 2 0 +K 3.9 Vng0989c
756010..756183 + 171 15790103 VNG0990H VNG0990H - - - H 1 0 Vng0990h
756675..757016 - 339 15790104 VNG0991H VNG0991H - - - H 2 0 +L 3.7 Vng0991h
757409..758119 - 708 15790105 VNG0992H VNG0992H - - - H 1 0 Vng0992h
758465..759277 + 810 15790106 VNG0993H VNG0993H - - - H 2 0 Vng0993h
759667..759870 - 201 15790107 VNG0994H VNG0994H - - - H 2 0 +I 3.0 Vng0994h
760365..760553 + 186 15790108 VNG0995H VNG0995H - - - H 0 0 +C 6.5 Vng0995h
769965..770189 + 222 15790116 VNG1003H VNG1003H - - - H 1 0 +CM 5.3 3.9 Vng1003h
770827..771546 + 717 15790118 VNG1006H VNG1006H - - - H 2 0 +I 3.4 Vng1006h
771722..771925 - 201 15790119 VNG1007H VNG1007H - - - H 2 0 +I 3.0 Vng1007h
773360..773950 + 588 15790120 flaA1a VNG1008G N COG1681 - H 1 0 +N 3.7 flagellin A1 precursor
774034..774546 + 510 15790121 flaA2 VNG1009G N COG1681 - H 1 0 +KN 3.5 6.0 flagellin A2 precursor
775533..775805 + 270 15790123 VNG1012H VNG1012H O COG0695 - H 0 0 Vng1012h
783700..784716 + 1014 15790131 VNG1023C VNG1023C - - + H 0 0 Vng1023c
784713..785120 + 405 15790132 VNG1024C VNG1024C H COG0720 + H 0 0 Vng1024c
785117..785962 + 843 15790133 VNG1025H VNG1025H - - + H 0 0 Vng1025h
785972..786526 + 552 15790134 VNG1026H VNG1026H - - + H 1 0 Vng1026h
786530..787174 - 642 15790135 tpiA VNG1027G G COG0149 + H 0 0 triosephosphate isomerase
800415..801842 + 1425 15790154 ptp VNG1054G R COG2244 - H 1 0 probable transport protein
801935..802657 + 720 15790155 graD4 VNG1055G M COG1209 - H 1 0 glucose-1-phosphate thymidylyltransferase
802721..803701 + 978 15790156 VNG1056C VNG1056C - - - H 2 0 Vng1056c
803726..805084 - 1356 15790157 VNG1057C VNG1057C P COG3119 - H 2 0 Vng1057c
805308..806426 + 1116 15790158 VNG1058H VNG1058H - - - H 2 0 Vng1058h
806499..807695 - 1194 15790159 VNG1059C VNG1059C M COG0438 - H 2 0 Vng1059c
807925..808710 + 783 15790160 VNG1060H VNG1060H - - - H 2 0 Vng1060h
808831..809730 + 897 15790161 rfbQ VNG1062G M COG0463 - H 2 0 rhamnosyl transferase
809745..810761 - 1014 15790162 VNG1063H VNG1063H - - - H 2 0 Vng1063h
811152..812492 - 1338 15790163 VNG1064H VNG1064H - - - H 1 0 Vng1064h
812621..813382 + 759 15790164 VNG1065C VNG1065C Q COG0500 - H 2 0 Vng1065c
813372..814280 + 906 15790165 VNG1066C VNG1066C M COG0463 - H 1 0 Vng1066c
814270..815256 - 984 15790166 exoM VNG1067G M COG0463 - H 0 0 succinoglycan biosynthesis protein
950618..950860 + 240 15790316 VNG1263C VNG1263C S COG1745 - H 1 0 +K 3.3 Vng1263c
950936..951319 - 381 15790317 VNG1264C VNG1264C S COG1885 - H 0 0 Vng1264c
951404..952309 + 903 15790318 ogg VNG1266G L COG0122 - H 0 0 8-oxoguanine DNA glycosylase
1167897..1171601 + 3702 15790541 cobN VNG1566G H COG1429 + H 0 0 cobalamin biosynthesis protein
1171591..1172304 + 711 15790542 cbiC VNG1567G H COG2082 + H 0 0 precorrin isomerase
1172301..1173053 + 750 15790543 cbiJ VNG1568G H COG2241 + H 0 0 precorrin-3 methylase
1173050..1173820 - 768 15790544 VNG1570H VNG1570H S COG2138 + H 0 0 Vng1570h
1174064..1174966 + 900 15790545 VNG1572C VNG1572C H COG2038 + H 0 0 Vng1572c
1174953..1176278 + 1323 15790546 cbiA VNG1573G H COG1797 + H 0 0 cobyrinic acid a,c-diamide synthase
1176275..1176952 + 675 15790547 cobI VNG1574G H COG2109 + H 0 0 cobalamin adenosyltransferase
1176954..1178492 + 1536 15790548 cbiP VNG1576G H COG1492 + H 0 0 cobyric acid synthase
1178690..1179148 + 456 15790549 VNG1577C VNG1577C R COG1011 + H 1 0 Vng1577c
1179145..1180071 + 924 15790550 VNG1578H VNG1578H H COG1270 + H 1 0 +A 3.4 Vng1578h
1180212..1180811 + 597 15790551 VNG1580H VNG1580H H COG0368 + H 1 0 Vng1580h
1180811..1181380 + 567 15790552 VNG1581C VNG1581C H COG2266 + H 0 0 Vng1581c
1181398..1182408 + 1008 15790553 hisC2 VNG1582G E COG0079 + H 0 0 histidinol-phosphate transaminase
1182401..1183096 + 693 15790554 VNG1583C VNG1583C S COG1865 + H 0 0 Vng1583c
1183163..1184704 - 1539 16554499 - VNG1585Cm S COG1479 - H 2 0 +KN 4.2 4.7 Uncharacterized conserved protein
1184767..1185759 + 990 15790556 VNG1587H VNG1587H - - - H 1 0 Vng1587h
1188524..1188937 + 411 15790557 VNG1589C VNG1589C - - - H 2 0 +S 3.5 Vng1589c
1189410..1189679 - 267 15790558 VNG1590H VNG1590H - - - H 2 0 Vng1590h
1189961..1190134 + 171 15790559 VNG1591H VNG1591H - - - H 1 0 +C 7.1 Vng1591h
1229492..1230340 - 846 15790601 VNG1650H VNG1650H - - - H 2 0 Vng1650h
1230496..1230699 - 201 15790602 VNG1651H VNG1651H - - - H 2 0 +I 3.0 Vng1651h
1231161..1232435 + 1272 15790603 VNG1653H VNG1653H L COG3385 - H 1 0 Vng1653h
1232639..1233823 - 1182 15790604 cdc48e VNG1654G O COG0464 - H 2 0 +K 3.4 cell division cycle protein
1234475..1234831 - 354 15790605 VNG1655H VNG1655H - - - H 1 0 +T 3.0 Vng1655h

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