Horizontal Gene Transfer Database

Correspondence analysis of relative synonymous codon usage for Helicobacter pylori J99 genes:




% variability
Axis 1
8.1
Axis 2
5.4
Axis 3
5.2
Axis 4
4.6
Axis 5
4.3
Axis 6
4.2
  Red (), blue () and green squares () correspond to genes proposed as being acquired by HGT and included in regions with a low, high and non-deviated G+C content, respectively. Yellow cross diagonals (x) correspond to putative highly expressed genes.
 

Correlation values between main axis in correspondence analysis and different parameters. See the Abbreviations used:
 

%G+C1
%G+C2
%G+C3
%G+CT
Nc
P2
X2
ICDI
Axis 1
-0.1
0.0
-0.6
-0.4
0.1
-0.1
0.2
0.1
Axis 2
0.0
0.1
0.1
0.1
-0.0
-0.0
0.0
-0.0


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