Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Helicobacter pylori J99 (See the Abbreviations used):
Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
35372..35674 + 300 15611102 jhp0031 jhp0031 S COG0718 H 1 2 putative
52193..52975 - 780 15611117 jhp0046 jhp0046 - - - H 2 0 putative TYPE II restriction enzyme
58798..59007 + 207 15611120 jhp0049 jhp0049 - - - H 1 2 +S 3.5 putative
59335..59997 + 660 15611121 jhp0050 jhp0050 - - - H 1 2 +EIKT 3.9 -3.3 3.3 6.0 putative
60127..60489 + 360 15611122 jhp0051 jhp0051 - - - H 0 2 putative
200914..201327 + 411 15611254 ndk jhp0184 F COG0105 H 1 2 NUCLEOSIDE DIPHOSPHATE KINASE
401969..402466 + 495 15611442 jhp0374 jhp0374 O COG1214 H 1 1 putative
461953..463068 + 1113 15611496 jhp0429 jhp0429 - - - H 0 0 putative Outer membrane protein
463077..464714 + 1635 15611497 jhp0430 jhp0430 L COG0827 - H 1 0 TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
464680..465528 + 846 15611498 jhp0431 jhp0431 M COG0859 - H 2 0 putative
517340..517939 - 597 15611542 orf12 jhp0475 - - - H 1 0 cag island protein
525169..526776 - 1605 15611545 orf16 jhp0478 - - - H 1 0 cag island protein
526781..527539 - 756 15611546 orf17 jhp0479 N COG3736 - H 0 0 cag island protein
527921..528577 + 654 15611547 orf18 jhp0480 - - - H 1 1 cag island protein
529660..530259 - 597 15611549 cagS jhp0482 - - - H 1 1 +M 3.7 cag island protein
530698..531078 - 378 15611550 cagQ jhp0483 - - - H 1 2 +M 5.0 cag island protein
531505..531849 - 342 15611551 cagP jhp0484 - - - H 2 2 +Y 3.2 cag island protein
532464..533594 + 1128 15611552 cagM jhp0485 - - - H 1 0 cag island protein
533609..534529 + 918 15611553 cagN jhp0486 - - - H 1 0 cag island protein
534611..535324 - 711 15611554 cagL jhp0487 - - - H 0 0 cag island protein
536477..537589 - 1110 15611556 cagH jhp0489 - - - H 0 0 cag island protein
537606..538034 - 426 15611557 cagG jhp0490 - - - H 0 2 cag island protein
538089..538895 - 804 15611558 cagF jhp0491 - - - H 2 0 cag island protein
538897..541848 - 2949 15611559 cagE jhp0492 N COG3451 - H 0 0 DNA transfer protein (Agrobacterium VirB4 homolog)
541857..542483 - 624 15611560 cagD jhp0493 - - - H 2 0 cag island protein
674254..674769 + 513 15611676 jhp0609 jhp0609 - - H 1 1 putative
724475..724819 + 342 15611714 jhp0647 jhp0647 - - H 1 1 putative
893499..893966 - 465 15611880 jhp0813 jhp0813 - - H 1 2 putative
908515..908817 - 300 15611892 jhp0825 jhp0825 S COG3041 H 1 2 putative
1015042..1016469 + 1425 15611984 virB4_2 jhp0917 N COG3451 - H 2 0 DNA transfer protein
1016457..1016879 + 420 15611985 virB4_3 jhp0918 N COG3451 - H 1 2 +I 3.5 DNA transfer protein
1016916..1018193 + 1275 15611986 topA_2 jhp0919 L COG0550 - H 2 0 topoisomerase I
1018568..1018849 + 279 15611987 jhp0920 jhp0920 - - - H 2 2 +M 3.7 putative
1019965..1021501 + 1533 15612561 jhp0922m - N COG3504 - H 0 0 Component of conjugal plasmid transfer system
1021498..1022304 + 804 15611989 jhp0924 jhp0924 - - - H 2 1 +S 5.0 putative
1021962..1022549 - 585 15611990 jhp0925 jhp0925 - - - H 2 0 putative
1022556..1023572 - 1014 15611991 jhp0926 jhp0926 - - - H 1 0 putative
1023777..1025174 + 1395 15611992 jhp0927 jhp0927 - - - H 2 0 putative
1032591..1032833 + 240 15611995 jhp0930 jhp0930 - - - H 2 2 putative
1032846..1034906 + 2058 15611996 topA_3 jhp0931 L COG0550 - H 1 0 topoisomerase I
1036277..1037296 - 1017 15611999 jhp0934 jhp0934 - - - H 2 0 putative
1037343..1037885 - 540 15612000 jhp0935 jhp0935 D COG1192 - H 1 0 putative
1038083..1038616 + 531 15612001 jhp0936 jhp0936 - - - H 2 0 putative
1038613..1039878 + 1263 15612002 jhp0937 jhp0937 N COG3846 - H 1 0 putative
1039890..1041140 + 1248 15612003 jhp0938 jhp0938 - - - H 1 0 +Q 3.5 putative
1041145..1042158 - 1011 15612004 jhp0939 jhp0939 - - - H 2 0 putative
1042390..1043367 + 975 15612005 jhp0940 jhp0940 - - - H 1 0 putative
1043684..1044679 - 993 15612006 jhp0941 jhp0941 L COG0582 - H 2 0 INTEGRASE/RECOMBINASE (XERCD FAMILY)
1045778..1047811 + 2031 15612007 jhp0942 jhp0942 N COG3843 - H 1 0 putative
1048376..1048561 - 183 15612008 jhp0943 jhp0943 - - - H 2 2 +FR 3.4 5.0 putative
1049107..1049874 + 765 15612009 jhp0944 jhp0944 - - - H 2 0 +N 4.3 putative
1049874..1051880 + 2004 15612010 jhp0945 jhp0945 - - - H 0 0 putative
1051673..1052110 + 435 15612011 jhp0946 jhp0946 - - - H 1 2 +T 6.3 putative
1053588..1053866 + 276 15612013 jhp0948 jhp0948 - - - H 2 2 putative
1053868..1055130 + 1260 15612014 jhp0949 jhp0949 N COG3846 - H 1 0 putative
1055202..1055885 + 681 15612015 jhp0950 jhp0950 - - - H 2 0 putative
1055965..1057038 - 1071 15612016 jhp0951 jhp0951 L COG0582 - H 2 0 INTEGRASE/RECOMBINASE (XERCD FAMILY)
1061075..1061266 + 189 15612017 jhp0952 jhp0952 - - - H 2 2 +HIQT 5.0 7.5 6.0 3.2 putative
1061274..1061498 - 222 15612018 jhp0953 jhp0953 - - - H 2 2 +KLNRSV 4.8 -3.2 8.0 8.9 -3.7 6.3 putative
1156909..1157292 - 381 15612108 jhp1043 jhp1043 - - H 2 2 putative
1207235..1207660 - 423 15612152 jhp1087 jhp1087 R COG0319 H 1 2 putative
1265253..1265768 - 513 15612198 cysE jhp1133 E COG1045 H 2 2 O-SERINE ACETYLTRANSFERASE
1271865..1272344 - 477 15612204 jhp1139 jhp1139 S COG1714 H 1 2 putative
1313280..1313759 + 477 15612247 nuoB jhp1182 C COG0377 H 2 1 NADH oxidoreductase I
1347126..1347521 - 393 15612280 rpsK jhp1215 J COG0100 H 1 2 30S RIBOSOMAL PROTEIN S11
1461570..1462055 + 483 15612396 jhp1331 jhp1331 - - H 1 2 putative
1467481..1467939 + 456 15612402 jhp1337 jhp1337 O COG0691 H 2 1 putative
1605688..1606098 + 408 15612522 jhp1457 jhp1457 S COG1664 H 1 2 putative

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