| Coordinates | Strand | Length | PID | Gene name | Synonym | FunctionCode | COG | GCRegion | HGT | SimGC | SimMah | Dev.AA | Function |
| 48991..49848 | - | 855 | 16272023 | HI0048 | HI0048 | Q | COG1028 | - | H | 0 | 0 | oxidoreductase | |
| 49848..50792 | - | 942 | 16272024 | HI0049 | HI0049 | G | COG0524 | - | H | 0 | 0 | 2-dehydro-3-deoxygluconokinase (kdgK) | |
| 50812..52068 | - | 1254 | 16273630 | - | HI0050m | S | COG1593 | - | H | 1 | 0 | Integral membrane protein, possible transporter | |
| 52092..52589 | - | 495 | 16272025 | HI0051 | HI0051 | S | COG3090 | - | H | 1 | 2 | conserved hypothetical transmembrane protein | |
| 52628..53614 | - | 984 | 16272026 | HI0052 | HI0052 | G | COG1638 | - | H | 2 | 0 | conserved hypothetical protein | |
| 53641..54669 | - | 1026 | 16272027 | HI0053 | HI0053 | E | COG1063 | - | H | 1 | 0 | zinc-type alcohol dehydrogenase | |
| 54779..55579 | + | 798 | 16272028 | HI0054 | HI0054 | K | COG2186 | - | H | 1 | 0 | uxu operon regulator (uxuR) | |
| 79805..80245 | - | 438 | 16272048 | HI0074 | HI0074 | - | - | H | 1 | 1 | H. influenzae predicted coding region HI0074 | ||
| 86575..87006 | + | 429 | 16272054 | HI0080 | HI0080 | S | COG3692 | H | 1 | 2 | conserved hypothetical protein | ||
| 117319..117660 | - | 339 | 16272083 | HI0109 | HI0109 | M | COG3765 | H | 2 | 2 | H. influenzae predicted coding region HI0109 | ||
| 175056..175580 | - | 522 | 16272126 | HI0159 | HI0159 | R | COG1399 | H | 1 | 2 | conserved hypothetical protein | ||
| 257623..257997 | - | 372 | 16272191 | HI0228 | HI0228 | - | - | H | 2 | 2 | H. influenzae predicted coding region HI0228 | ||
| 288442..289434 | - | 990 | 16272216 | HI0258 | HI0258 | M | COG1442 | H | 2 | 2 | glycosyl transferase, putative | ||
| 363918..364511 | + | 591 | 16272288 | HI0336 | HI0336 | H | COG0521 | H | 1 | 2 | molybdopeterin biosynthesis protein (mog) | ||
| 453698..454108 | - | 408 | 16272378 | HI0430 | HI0430 | L | COG0776 | H | 1 | 2 | DNA-binding protein HU-alpha (hupA) | ||
| 560041..560826 | - | 783 | 16272479 | HI0535 | HI0535 | O | COG0829 | H | 1 | 2 | urease accessory protein (ureH) | ||
| 560901..561578 | - | 675 | 16272480 | HI0536 | HI0536 | O | COG0378 | + | H | 1 | 0 | urease accessory protein (ureG) | |
| 561681..562265 | - | 582 | 16272481 | HI0537 | HI0537 | O | COG0830 | + | H | 2 | 0 | urease accessory protein (ureF) | |
| 562373..562930 | - | 555 | 16272482 | HI0538 | HI0538 | O | COG2371 | + | H | 0 | 2 | +H 5.6 | urease accessory protein (ureE) |
| 563058..564776 | - | 1716 | 16272483 | HI0539 | HI0539 | E | COG0804 | + | H | 1 | 0 | urease, alpha subunit (ureC) | |
| 564788..565093 | - | 303 | 16272484 | HI0540 | HI0540 | E | COG0832 | + | H | 0 | 2 | urease, beta subunit (ureB) | |
| 565169..565471 | - | 300 | 16272485 | HI0541 | HI0541 | E | COG0831 | + | H | 1 | 2 | +M 3.2 | urease, gamma subunit (ureA) |
| 565634..565924 | + | 288 | 16272486 | HI0542 | HI0542 | O | COG0234 | + | H | 0 | 2 | chaperonin (groES) | |
| 622876..623529 | + | 651 | 16272544 | HI0601 | HI0601 | N | COG3070 | H | 1 | 1 | DNA transformation protein (tfoX) | ||
| 853827..854216 | - | 387 | 16272746 | HI0804 | HI0804 | T | COG0664 | H | 2 | 1 | H. influenzae predicted coding region HI0804 | ||
| 918515..919138 | + | 621 | 16272806 | HI0866 | HI0866 | M | COG3765 | - | H | 2 | 0 | H. influenzae predicted coding region HI0866 | |
| 919376..920590 | + | 1212 | 16272807 | HI0867 | HI0867 | R | COG2244 | - | H | 1 | 0 | lipopolysaccharide biosynthesis protein, putative | |
| 920571..921323 | + | 750 | 16272808 | HI0868 | HI0868 | M | COG0463 | - | H | 2 | 0 | conserved hypothetical protein | |
| 921289..921846 | + | 555 | 16272809 | HI0869 | HI0869 | M | COG0463 | - | H | 2 | 0 | H. influenzae predicted coding region HI0869 | |
| 922991..923281 | + | 288 | 16272811 | HI0870.1 | HI0870.1 | - | - | - | H | 2 | 2 | +FY 5.2 3.6 | H. influenzae predicted coding region HI0870.1 |
| 923293..924213 | + | 918 | 16272812 | HI0871 | HI0871 | - | - | - | H | 2 | 2 | H. influenzae predicted coding region HI0871 | |
| 924206..925621 | + | 1413 | 16272813 | HI0872 | HI0872 | M | COG2148 | - | H | 2 | 0 | undecaprenyl-phosphate galactosephosphotransferase (rfbP) | |
| 1161239..1161547 | + | 306 | 16273025 | HI1099 | HI1099 | - | - | H | 1 | 2 | H. influenzae predicted coding region HI1099 | ||
| 1218171..1218800 | - | 627 | 16273075 | HI1150 | HI1150 | S | COG3117 | H | 1 | 1 | conserved hypothetical protein | ||
| 1327375..1327698 | + | 321 | 16273170 | HI1251 | HI1251 | N | COG3093 | H | 1 | 2 | virulence associated protein A (vapA) | ||
| 1395026..1395568 | + | 540 | 16273648 | infC | HI1318m | J | COG0290 | H | 1 | 1 | Translation initiation factor IF3 | ||
| 1476415..1477183 | - | 765 | 16273664 | pstB | HI1380 | P | COG1117 | - | H | 0 | 0 | phosphate transport system, ATPase component | |
| 1477193..1478041 | - | 846 | 16273291 | HI1381 | HI1381 | P | COG0581 | - | H | 0 | 0 | phosphate ABC transporter, permease protein (pstA) | |
| 1478043..1478990 | - | 945 | 16273292 | HI1382 | HI1382 | P | COG0573 | - | H | 0 | 0 | phosphate ABC transporter, permease protein (pstC) | |
| 1479081..1480084 | - | 1002 | 16273649 | pstS | HI1383m | P | COG0226 | - | H | 0 | 0 | ABC-type phosphate transport system, periplasmic component | |
| 1480541..1481089 | + | 546 | 16273293 | HI1384 | HI1384 | P | COG1528 | - | H | 1 | 0 | ferritin (rsgA) | |
| 1481105..1481602 | + | 495 | 16273294 | HI1385 | HI1385 | P | COG1528 | - | H | 2 | 0 | ferritin (rsgA) | |
| 1481976..1482422 | + | 444 | 16273295 | HI1386 | HI1386 | - | - | - | H | 1 | 0 | H. influenzae predicted coding region HI1386 | |
| 1484727..1485113 | + | 384 | 16273298 | HI1388.1 | HI1388.1 | - | - | H | 1 | 1 | H. influenzae predicted coding region HI1388.1 | ||
| 1493223..1493645 | - | 420 | 16273305 | HI1395 | HI1395 | E | COG1101 | H | 1 | 2 | H. influenzae predicted coding region HI1395 | ||
| 1508241..1508597 | - | 354 | 16273323 | HI1416 | HI1416 | - | - | H | 1 | 2 | H. influenzae predicted coding region HI1416 | ||
| 1511013..1511588 | + | 573 | 16273327 | HI1422 | HI1422 | K | COG3561 | H | 1 | 2 | H. influenzae predicted coding region HI1422 | ||
| 1533645..1533968 | - | 321 | 16273353 | HI1446 | HI1446 | S | COG3100 | H | 1 | 2 | conserved hypothetical protein | ||
| 1559962..1560681 | - | 717 | 16273380 | HI1476 | HI1476 | K | COG2932 | H | 1 | 1 | transcriptional regulatory protein | ||
| 1570091..1570441 | + | 348 | 16273395 | HI1494 | HI1494 | - | - | H | 2 | 2 | N-acetylmuramoyl-L-alanine amidase | ||
| 1570448..1570708 | + | 258 | 16273396 | HI1495 | HI1495 | - | - | + | H | 2 | 2 | H. influenzae predicted coding region HI1495 | |
| 1570705..1570959 | + | 252 | 16273397 | HI1496 | HI1496 | - | - | + | H | 0 | 2 | H. influenzae predicted coding region HI1496 | |
| 1571077..1571304 | + | 225 | 16273398 | HI1497 | HI1497 | T | COG1734 | + | H | 2 | 2 | +C 4.4 | conserved hypothetical protein |
| 1571211..1571630 | + | 417 | 16273399 | HI1498 | HI1498 | - | - | H | 2 | 2 | H. influenzae predicted coding region HI1498 | ||
| 1571635..1571943 | + | 306 | 16273400 | HI1498.1 | HI1498.1 | - | - | H | 1 | 2 | H. influenzae predicted coding region HI1498.1 | ||
| 1571955..1572524 | + | 567 | 16273401 | HI1499 | HI1499 | - | - | + | H | 2 | 2 | H. influenzae predicted coding region HI1499 | |
| 1572524..1574050 | + | 1524 | 16273402 | HI1500 | HI1500 | - | - | + | H | 2 | 0 | H. influenzae predicted coding region HI1500 | |
| 1574062..1575624 | + | 1560 | 16273403 | HI1501 | HI1501 | - | - | + | H | 2 | 0 | H. influenzae predicted coding region HI1501 | |
| 1575715..1576959 | + | 1242 | 16273404 | HI1502 | HI1502 | S | COG2369 | + | H | 2 | 0 | H. influenzae predicted coding region HI1502 | |
| 1577097..1577537 | + | 438 | 16273405 | HI1503 | HI1503 | - | - | + | H | 0 | 1 | G protein (muG-1) | |
| 1577768..1578835 | + | 1065 | 16273406 | HI1504 | HI1504 | - | - | + | H | 2 | 0 | I protein (muI) | |
| 1578835..1579761 | + | 924 | 16273407 | HI1505 | HI1505 | - | - | + | H | 2 | 0 | H. influenzae predicted coding region HI1505 | |
| 1579844..1580101 | + | 255 | 16273408 | HI1506 | HI1506 | - | - | + | H | 2 | 2 | H. influenzae predicted coding region HI1506 | |
| 1580113..1580229 | + | 114 | 16273409 | HI1507 | HI1507 | - | - | + | H | 1 | 2 | +A 3.9 | H. influenzae predicted coding region HI1507 |
| 1580232..1580657 | + | 423 | 16273410 | HI1508 | HI1508 | - | - | + | H | 2 | 2 | conserved hypothetical protein | |
| 1580624..1581208 | + | 582 | 16273411 | HI1509 | HI1509 | - | - | + | H | 2 | 2 | conserved hypothetical protein | |
| 1581412..1582875 | + | 1461 | 16273413 | HI1511 | HI1511 | - | - | + | H | 2 | 0 | sheath protein gpL (muL) | |
| 1582885..1583241 | + | 354 | 16273414 | HI1512 | HI1512 | - | - | + | H | 2 | 2 | +T 3.8 | conserved hypothetical protein |
| 1583254..1583637 | + | 381 | 16273415 | HI1513 | HI1513 | - | - | + | H | 2 | 2 | conserved hypothetical protein | |
| 1583718..1585613 | + | 1893 | 16273416 | HI1514 | HI1514 | - | - | + | H | 2 | 0 | H. influenzae predicted coding region HI1514 | |
| 1585613..1586980 | + | 1365 | 16273417 | HI1515 | HI1515 | - | - | + | H | 2 | 0 | 64 kDa virion protein (muN) | |
| 1586980..1588240 | + | 1260 | 16273652 | - | HI1516m | - | - | + | H | 2 | 0 | 43 kD tail protein | |
| 1588277..1588825 | + | 546 | 16273418 | HI1518 | HI1518 | - | - | + | H | 2 | 1 | H. influenzae predicted coding region HI1518 | |
| 1588834..1589241 | + | 405 | 16273419 | HI1519 | HI1519 | - | - | + | H | 2 | 2 | +W 3.6 | H. influenzae predicted coding region HI1519 |
| 1589241..1590308 | + | 1065 | 16273420 | HI1520 | HI1520 | S | COG3299 | + | H | 2 | 0 | +T 3.2 | conserved hypothetical protein |
| 1590394..1590900 | + | 504 | 16273421 | HI1521 | HI1521 | S | COG3778 | + | H | 0 | 2 | conserved hypothetical protein | |
| 1636791..1637207 | - | 414 | 16273465 | HI1568 | HI1568 | - | - | H | 1 | 2 | G protein (muG-2) | ||
| 1637480..1637989 | - | 507 | 16273466 | HI1570 | HI1570 | - | - | H | 1 | 2 | H. influenzae predicted coding region HI1570 | ||
| 1646702..1647673 | + | 969 | 16273473 | HI1578 | HI1578 | M | COG0463 | H | 2 | 2 | glycosyl transferase, putative | ||
| 1648798..1649217 | - | 417 | 16273476 | HI1582 | HI1582 | S | COG3102 | H | 2 | 1 | conserved hypothetical protein | ||
| 1734144..1734527 | - | 381 | 16273553 | HI1666 | HI1666 | S | COG3108 | H | 1 | 1 | conserved hypothetical protein | ||
| 1765866..1766750 | - | 882 | 16273583 | HI1696 | HI1696 | M | COG0463 | - | H | 1 | 0 | lipopolysaccharide biosynthesis protein, putative | |
| 1766762..1767535 | - | 771 | 16273584 | HI1697 | HI1697 | M | COG3306 | - | H | 2 | 0 | lipopolysaccharide biosynthesis protein, putative | |
| 1767547..1768608 | - | 1059 | 16273585 | HI1698 | HI1698 | M | COG0438 | - | H | 2 | 0 | lipopolysaccharide biosynthesis protein | |
| 1768610..1769524 | - | 912 | 16273586 | HI1699 | HI1699 | - | - | - | H | 2 | 0 | lipopolysaccharide biosynthesis protein, putative | |
| 1769521..1770735 | - | 1212 | 16273587 | HI1700 | HI1700 | R | COG2244 | - | H | 2 | 0 | +Y 3.7 | lipopolysaccharide biosynthesis protein, putative |
| 1770861..1771604 | + | 741 | 16273588 | HI1701 | HI1701 | S | COG1434 | - | H | 0 | 0 | conserved hypothetical protein |
