Chlamydia muridarum: 909 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Chlamydia muridarum genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 50.7 | 38.4 | 33.2 | 40.8 |
st. dev. | 4.3 | 4.2 | 3.6 | 2.2 |
skewness | -0.6 | 0.2 | 0.4 | 0.0 |
kurtosis | 4.0 | 4.0 | 4.3 | 4.3 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 7.3 | 2.3 | M | 2.0 | 1.0 |
C | 1.8 | 1.2 | N | 3.5 | 1.5 |
D | 4.4 | 1.6 | P | 4.3 | 1.6 |
E | 6.5 | 2.4 | Q | 4.1 | 1.7 |
F | 4.9 | 2.0 | R | 4.9 | 2.0 |
G | 6.3 | 2.3 | S | 8.2 | 2.4 |
H | 2.2 | 1.1 | T | 4.9 | 1.8 |
I | 6.8 | 1.9 | V | 6.6 | 2.3 |
K | 6.1 | 2.4 | W | 1.0 | 0.8 |
L | 11.4 | 2.8 | Y | 3.0 | 1.3 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 35.1 | 14.7 | CAT (H) | 16.1 | 9.1 | CCT (P) | 22.3 | 9.9 | AGT (S) | 10.2 | 7.0 |
GCC (A) | 10.3 | 6.8 | CAC (H) | 6.2 | 5.6 | CCC (P) | 7.4 | 6.4 | AGC (S) | 8.1 | 6.1 |
GCG (A) | 8.5 | 6.4 | ATT (I) | 38.1 | 13.3 | CCG (P) | 3.4 | 4.0 | ACT (T) | 17.1 | 8.8 |
GCA (A) | 18.5 | 9.6 | ATC (I) | 17.0 | 9.6 | CCA (P) | 9.9 | 6.3 | ACC (T) | 8.8 | 7.0 |
TGT (C) | 11.1 | 8.6 | ATA (I) | 12.7 | 7.6 | CAG (Q) | 13.8 | 8.7 | ACG (T) | 7.1 | 5.4 |
TGC (C) | 6.5 | 6.1 | AAG (K) | 17.8 | 12.0 | CAA (Q) | 27.4 | 13.9 | ACA (T) | 15.6 | 9.3 |
GAT (D) | 34.1 | 14.0 | AAA (K) | 43.3 | 19.2 | CGT (R) | 12.3 | 8.5 | GTT (V) | 27.8 | 13.8 |
GAC (D) | 9.5 | 6.7 | TTG (L) | 21.1 | 11.6 | CGC (R) | 7.2 | 5.9 | GTC (V) | 9.5 | 6.3 |
GAG (E) | 22.6 | 12.8 | TTA (L) | 33.7 | 13.4 | CGG (R) | 4.1 | 4.4 | GTG (V) | 12.7 | 8.6 |
GAA (E) | 41.8 | 18.0 | CTT (L) | 26.3 | 12.1 | CGA (R) | 10.1 | 6.8 | GTA (V) | 16.2 | 8.7 |
TTT (F) | 33.3 | 15.4 | CTC (L) | 10.4 | 8.6 | AGG (R) | 3.6 | 4.5 | TGG (W) | 9.5 | 7.7 |
TTC (F) | 15.5 | 9.9 | CTG (L) | 8.3 | 5.9 | AGA (R) | 11.5 | 8.9 | TAT (Y) | 20.6 | 10.6 |
GGT (G) | 10.9 | 7.7 | CTA (L) | 13.4 | 8.6 | TCT (S) | 34.6 | 12.5 | TAC (Y) | 8.9 | 6.8 |
GGC (G) | 8.1 | 6.0 | ATG (M) | 20.3 | 9.7 | TCC (S) | 12.3 | 8.5 | TGA (.) | 0.5 | 1.3 |
GGG (G) | 16.0 | 9.7 | AAT (N) | 24.5 | 11.3 | TCG (S) | 6.1 | 5.0 | TAG (.) | 1.0 | 2.0 |
GGA (G) | 27.3 | 12.5 | AAC (N) | 10.2 | 8.0 | TCA (S) | 10.0 | 6.9 | TAA (.) | 2.2 | 2.5 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 1.92 | 0.61 | CAT (H) | 1.36 | 0.56 | CCT (P) | 2.08 | 0.80 | AGT (S) | 0.80 | 0.63 |
GCC (A) | 0.57 | 0.43 | CAC (H) | 0.53 | 0.48 | CCC (P) | 0.65 | 0.55 | AGC (S) | 0.63 | 0.55 |
GCG (A) | 0.47 | 0.42 | ATT (I) | 1.68 | 0.45 | CCG (P) | 0.31 | 0.40 | ACT (T) | 1.41 | 0.70 |
GCA (A) | 1.01 | 0.51 | ATC (I) | 0.74 | 0.41 | CCA (P) | 0.88 | 0.60 | ACC (T) | 0.70 | 0.58 |
TGT (C) | 1.17 | 0.62 | ATA (I) | 0.57 | 0.38 | CAG (Q) | 0.67 | 0.39 | ACG (T) | 0.60 | 0.52 |
TGC (C) | 0.68 | 0.56 | AAG (K) | 0.57 | 0.32 | CAA (Q) | 1.31 | 0.41 | ACA (T) | 1.26 | 0.68 |
GAT (D) | 1.51 | 0.40 | AAA (K) | 1.42 | 0.33 | CGT (R) | 1.48 | 0.94 | GTT (V) | 1.68 | 0.62 |
GAC (D) | 0.45 | 0.36 | TTG (L) | 1.17 | 0.73 | CGC (R) | 0.93 | 0.85 | GTC (V) | 0.59 | 0.46 |
GAG (E) | 0.69 | 0.34 | TTA (L) | 1.77 | 0.68 | CGG (R) | 0.48 | 0.57 | GTG (V) | 0.74 | 0.52 |
GAA (E) | 1.29 | 0.36 | CTT (L) | 1.38 | 0.63 | CGA (R) | 1.21 | 0.82 | GTA (V) | 0.98 | 0.51 |
TTT (F) | 1.35 | 0.37 | CTC (L) | 0.54 | 0.43 | AGG (R) | 0.43 | 0.61 | TGG (W) | - | - |
TTC (F) | 0.63 | 0.36 | CTG (L) | 0.43 | 0.34 | AGA (R) | 1.44 | 0.98 | TAT (Y) | 1.36 | 0.49 |
GGT (G) | 0.68 | 0.50 | CTA (L) | 0.70 | 0.44 | TCT (S) | 2.52 | 0.79 | TAC (Y) | 0.59 | 0.45 |
GGC (G) | 0.53 | 0.45 | ATG (M) | - | - | TCC (S) | 0.90 | 0.56 | TGA (.) | - | - |
GGG (G) | 1.02 | 0.62 | AAT (N) | 1.38 | 0.45 | TCG (S) | 0.45 | 0.39 | TAG (.) | - | - |
GGA (G) | 1.72 | 0.68 | AAC (N) | 0.59 | 0.42 | TCA (S) | 0.71 | 0.47 | TAA (.) | - | - |