Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Clostridium acetobutylicum ATCC824 (See the Abbreviations used):
Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
59688..59999 + 309 15893345 - CAC0047 - - H 1 2 Uncharacterized small conserved protein, homolog of yfjA/yukE B.subtilis
79405..79794 + 387 15893366 - CAC0069 P COG2703 H 1 1 Predicted iron-binding protein, hemerythrin
133639..134019 + 378 15893418 cheY CAC0122 T COG0784 H 1 2 Chemotaxis respons regulator (cheY)
150238..150762 + 522 15893440 - CAC0145 L COG2816 H 1 1 N-terminal Zn-ribbon domain and C-terminal MutT domain, YJAD ortholog
153410..154096 + 684 15893443 - CAC0148 - COG0329 H 1 1 Predicted enzyme with TIM-barrel fold
183692..184990 - 1296 15893456 - CAC0161 P COG2807 H 2 2 ABC transporter (permease)
223143..223565 + 420 15893490 - CAC0197 K COG1846 H 1 2 Transcriptional regulator, MarR/EmrR family
456575..457030 - 453 15893683 - CAC0392 M COG3409 H 2 1 Peptodoglycan-binding domain
461009..461557 + 546 15893688 - CAC0397 M COG0794 H 1 2 Predicted sugar phosphate aminotransferase involved in capsule formation
557045..557680 - 633 15893773 - CAC0482 R COG2220 H 1 1 Zn-dependent hydrolases of the metallo-beta-lactamase superfamily
604412..605098 + 684 15893814 - CAC0524 T COG0745 H 2 2 Response regulator (CheY-like and HTH domains)
605085..606074 + 987 15893815 - CAC0525 T COG0642 H 2 2 Sensory transduction histidine kinase (HisKA and HATPase_c domains)
606157..606840 + 681 15893816 - CAC0526 R COG1136 H 2 2 ABC transporter, ATPase component
606837..609428 + 2589 15893817 - CAC0527 R COG0577 H 2 2 Predicted permease, domain duplication
613721..614170 + 447 15893820 - CAC0530 - - H 2 1 Hypothetical protein
661465..661788 + 321 15893861 - CAC0571 K COG1695 H 1 2 Predicted transcriptional regulator
680364..680792 + 426 15893876 - CAC0587 C COG0716 H 2 1 Flavodoxin
763280..764284 - 1002 15893945 - CAC0657 L COG3666 - H 1 0 Predicted transposase (5' fragment)
764963..766519 + 1554 15893946 - CAC0658 R COG0641 - H 0 0 Fe-S oxidoreductase
766556..767875 + 1317 15893947 - CAC0659 R COG0612 - H 2 0 Predicted Zn-dependent peptidase
768366..770249 + 1881 15893949 - CAC0661 Q COG1132 - H 1 0 ABC transporter ATP-binding protein (multidrug resistance protein)
770436..771791 + 1353 15893950 - CAC0662 G COG1653 - H 1 0 Sugar ABC transporter, periplasmic sugar-bindind protein
771822..772301 + 477 15893951 - CAC0663 - - - H 0 1 Hypothetical protein
772540..773898 + 1356 15893952 - CAC0664 - COG2182 - H 1 0 Sugar-binding periplasmic protein
954854..955174 + 318 15894111 - CAC0824 O COG0526 H 1 2 Thioredoxin
1082300..1082647 + 345 15894229 hisI_1 CAC0942 E COG0139 H 1 2 Phosphoribosyl-AMP cyclohydrolase
1142139..1142636 - 495 15894282 - CAC0995 - - H 2 2 Predicted membrane protein
1215448..1216527 + 1077 15894349 - CAC1063 R COG0457 - H 1 0 TPR-repeat-containing protein
1216910..1217674 + 762 15894350 - CAC1064 R COG0457 - H 1 0 TPR-repeat-containing protein
1217964..1218590 + 624 15894351 - CAC1065 - - - H 1 0 Uncharacterized protein, related stage III sporulation protein AH of Bacillus sp.
1220811..1221581 + 768 15894353 - CAC1067 R COG0457 - H 2 0 TPR-repeat containing protein
1270985..1271959 + 972 15894387 - CAC1102 - - - H 2 0 Predicted membrane protein
1272078..1272422 + 342 15894388 - CAC1103 - - - H 2 1 +CH 3.1 3.2 Possible metal-binding domain, related to a correspondent domain of site-specific recombinase
1272479..1272940 - 459 15894389 - CAC1104 - - - H 0 1 +T 5.4 Hypothetical protein
1272953..1273207 - 252 15894390 - CAC1105 - - - H 2 2 +NQ 3.1 3.6 Hypothetical protein
1273220..1273495 - 273 15894391 - CAC1106 - - - H 1 1 Hypothetical protein
1273548..1274300 - 750 15894392 - CAC1107 - COG0840 - H 1 0 +T 3.6 Hypothetical protein, CF-36 family
1304361..1306796 - 2433 15894423 - CAC1139 - - - H 1 0 Phage related protein, YonO B.subtilis homolog
1306839..1307054 - 213 15894424 - CAC1140 - - - H 0 2 +CH 7.2 3.1 Hypothetical protein
1307375..1309204 - 1827 15894426 uvrD CAC1142 L COG0210 - H 1 0 ATP-dependent DNA helicase, uvrD-like
1309267..1311447 - 2178 15894427 recD CAC1143 L COG0507 - H 1 0 Exodeoxyribonuclease V, Alpha subunit, RecD
1314243..1314503 + 258 15894428 - CAC1145 - - - H 2 2 +I 3.2 Hypothetical protein
1315153..1315461 + 306 15894429 - CAC1146 - - - H 2 1 Hypothetical protein
1315515..1315931 + 414 15894430 - CAC1147 - - - H 1 0 Hypothetical protein
1315992..1316486 + 492 15894431 - CAC1148 - - - H 1 0 Hypothetical protein
1317749..1318021 + 270 15894434 - CAC1151 - - - H 2 1 Hypothetical protein
1318051..1318284 + 231 15894435 - CAC1152 - - - H 2 2 Hypothetical protein
1318341..1318592 + 249 15894436 - CAC1153 - - - H 2 2 +F 3.2 Hypothetical protein
1323367..1323687 + 318 15894445 - CAC1162 - - - H 0 2 +Q 3.2 Hypothetical protein, CF-11 family
1323708..1324067 + 357 15894446 - CAC1163 - - - H 1 0 Hypothetical protein
1324373..1324621 + 246 15894448 - CAC1165 - - - H 2 2 +KS 3.4 -3.1 Hypothetical protein
1324730..1324960 + 228 15894449 - CAC1166 - - - H 1 2 +Y 3.4 Hypothetical protein
1325004..1325534 + 528 15894450 - CAC1167 - - - H 2 0 Hypothetical protein
1325816..1326874 + 1056 15894451 - CAC1168 - - - H 1 0 Uncharacterized conserved protein
1327295..1328194 + 897 15894453 xerD CAC1170 L COG0582 - H 1 0 Integrase/recombinase (xerD/xerC family)
1345541..1345717 + 174 15894479 - CAC1196 - - - H 2 2 +I 3.3 Hypothetical protein
1346771..1348417 + 1644 15894481 recJ CAC1198 L COG0608 - H 0 0 Single-stranded-DNA-specific exonuclease (recJ)
1348716..1349078 + 360 15894482 - CAC1199 - - - H 1 0 Hypothetical protein
1350717..1351274 + 555 15894484 - CAC1201 - - - H 2 0 +C 4.1 Hypothetical protein
1351418..1351702 + 282 15894485 - CAC1202 - - - H 2 0 Hypothetical protein
1352103..1352321 + 216 15894488 - CAC1205 - - - H 2 2 +RY 4.0 3.8 Hypothetical protein
1352356..1352958 + 600 15894489 - CAC1206 - - - H 1 2 +HS 7.1 4.5 Predicted membrane protein
1353027..1353317 + 288 15894490 - CAC1207 - - - H 2 2 +K 4.0 Hypothetical protein
1356557..1356769 + 210 15894494 - CAC1211 - - - H 0 2 +CSY 7.3 -3.1 3.1 Hypothetical protein
1356808..1357413 + 603 15894495 - CAC1212 - - - H 1 0 +K 3.6 Hypothetical protein
1360334..1361464 + 1128 15894499 - CAC1216 - - - H 1 0 Hypothetical protein
1361464..1362051 + 585 15894500 - CAC1217 F COG0194 - H 0 1 Guanylate kinase (P-loop type)
1362665..1363081 + 414 15894502 - CAC1219 - - - H 2 0 Hypothetical protein
1363113..1363367 + 252 15894503 - CAC1220 - - - H 2 1 Hypothetical protein
1363364..1363582 + 216 15894504 - CAC1221 - - - H 1 2 +K 3.3 Hypothetical protein
1364934..1368272 + 3336 15894506 dnaE CAC1223 L COG0587 - H 0 0 DNA Polymerase III Alpha chain (dnaE)
1368526..1369131 + 603 15894507 - CAC1224 - - - H 0 0 Hypothetical protein
1369272..1369529 + 255 15894508 - CAC1225 - - - H 1 2 +CKV 8.2 3.6 -3.2 Hypothetical protein
1403607..1403909 + 300 15894541 rpl27 CAC1259 J COG0211 H 1 2 Ribosomal protein L27
1433113..1433415 + 300 15894572 - CAC1290 - - H 1 2 Uncharacterized protein, homolog of YQFC B.subtilis
1456080..1456553 - 471 15894594 - CAC1314 - - - H 1 1 +T 4.1 Hypothetical protein
1457420..1457773 + 351 15894596 - CAC1316 - - - H 1 1 +I 3.3 Predicted membrane protein
1457947..1458717 - 768 15894597 - CAC1317 P COG1226 - H 1 0 Potassium channel subunit
1459155..1459667 + 510 15894598 - CAC1318 - - - H 1 0 Hypothetical protein
1460057..1460758 + 699 15894599 glpF CAC1319 G COG0580 H 1 1 Glycerol uptake facilitator protein, GLPF
1510937..1511245 + 306 15894645 - CAC1366 - - H 1 2 Predicted membrane protein
1625722..1626300 + 576 15894757 rpsD CAC1478 J COG0522 H 1 1 Ribosomal protein S4
1759563..1759898 + 333 15894897 - CAC1619 - - H 1 2 Hypothetical protein
1778324..1778710 + 384 15894914 - CAC1636 - - H 1 2 Uncharacterized protein, homolog of B. firmus (2654481)
1948183..1948632 + 447 15895074 - CAC1798 S COG0779 H 1 1 Uncharacterized protein, YhbC family
1992885..1993760 - 873 15895115 - CAC1840 R COG0456 H 1 2 Predicted acetyltransferase domain containing protein
2015950..2016390 + 438 15895141 - CAC1866 - - H 1 1 Putative 4-Cys ferredoxin
2036473..2037393 - 918 15895161 - CAC1886 - - H 1 2 Uncharacterized phage related protein
2037758..2038189 - 429 15895163 - CAC1888 - - H 2 1 Uncharacterized phage related protein
2048246..2048443 - 195 15895182 - CAC1908 - - - H 0 2 +I 3.7 Predicted membrane protein
2048697..2049314 - 615 15895183 rnd CAC1909 J COG0349 - H 2 0 Ribonuclease D
2049327..2050202 - 873 15895184 - CAC1910 - - - H 1 0 Predicted membrane protein
2051108..2051326 - 216 15895187 - CAC1913 K COG1996 - H 1 2 +CN 5.7 -3.0 Zn-finger containing protein
2053592..2053993 - 399 15895193 - CAC1919 L COG0629 H 1 1 Phage related SSB-like protein
2054761..2055093 - 330 15895197 - CAC1923 - - H 1 2 Hypothetical protein
2128579..2128890 - 309 15895287 - CAC2017 I COG0236 H 2 2 Acyl carrier protein
2138937..2139569 - 630 15895298 - CAC2028 - - - H 2 0 Hypothetical protein, CF-4 family
2140151..2140615 - 462 15895300 - CAC2030 - - - H 2 1 +C 3.9 Hypothetical protein
2140781..2141023 - 240 15895301 - CAC2031 - - - H 1 2 Hypothetical protein
2141030..2141479 - 447 15895302 - CAC2032 - - - H 2 2 Hypothetical protein
2142219..2142407 - 186 15895304 - CAC2034 - - - H 2 2 Hypothetical protein
2142442..2142912 - 468 15895305 - CAC2035 - - - H 1 0 Hypothetical protein, CF-23 family
2143858..2144517 - 657 15895307 - CAC2037 - - - H 1 0 Hypothetical protein, CF-39 family
2144564..2144914 - 348 15895308 - CAC2038 - - - H 2 0 Hypothetical protein, CF-23 family
2160235..2160609 - 372 15895324 - CAC2054 - - H 2 1 Hypothetical protein
2161220..2161609 - 387 15895326 - CAC2056 - - H 1 2 Hypothetical protein
2323103..2323630 - 525 15895498 - CAC2230 S COG2340 H 1 1 Uncharacterized protein of PR1 family, YkwD B.subtilis ortholog
2340116..2340502 - 384 15895513 - CAC2245 O COG1765 H 1 2 Stress-induced protein OsmC
2858726..2859475 - 747 15895990 - CAC2733 R COG1277 H 1 1 Uncharacterized conserved membrane protein
2957099..2957545 - 444 15896080 - CAC2825 S COG1671 H 2 2 Uncharacterized conserved protein, YQXD B.subtilis ortholog
3067021..3067491 - 468 15896188 - CAC2935 K COG0454 H 1 1 Predicted acetyltransferase
3091014..3091319 - 303 15896210 - CAC2957 - - H 1 2 PTS system IIB component (galactitol/fructose specific)
3100483..3100797 - 312 15896218 lacF CAC2965 G COG1447 H 1 2 PTS system lactose-specific enzyme IIA
3256537..3256932 - 393 15896357 rpsK CAC3106 J COG0100 H 1 2 Ribosomal protein S11
3264445..3264813 - 366 15896373 rplN CAC3123 J COG0093 H 1 2 Ribosomal protein L14
3270300..3271493 - 1191 15896386 tufA CAC3136 J COG0050 H 2 2 Elongation Factor Tu (Ef-Tu)
3507964..3508500 - 534 15896577 - CAC3334 R COG0655 H 2 2 Multimeric flavodoxin WrbA family protein
3511501..3513057 - 1554 15896582 - CAC3339 R COG0488 + H 1 0 ATPase component of ABC transporter (two ATPase domains)
3513129..3513782 - 651 15896583 - CAC3340 S COG2357 + H 1 0 Uncharacterized conserved domain seen in the bacterial SpoT
3514066..3514692 + 624 15896584 - CAC3341 R COG0655 + H 2 0 Multimeric flavodoxin WrbA family protein
3514815..3515693 + 876 15896585 - CAC3342 I COG2084 + H 1 0 Dehydrogenase related to 3-hydroxyisobutyrate dehydrogenase, YKWC B.subtilis ortholog
3515857..3517179 + 1320 15896586 - CAC3343 - - + H 1 0 Biotin synthase related domain containing protein
3517158..3517922 + 762 15896587 - CAC3344 - - + H 1 1 Uncharacterized protein, homolog of hypothetical protein (GI:5918205) from Pseudomonas stutzeri
3541393..3541710 - 315 15896606 - CAC3363 - - H 1 2 Hypothetical protein
3652787..3653326 - 537 15896696 - CAC3456 R COG1268 H 1 1 Uncharacterized conserved protein, bioY family
3683454..3684329 - 873 15896721 - CAC3484 Q COG1028 H 2 1 Short-chain alcohol dehydrogenase family protein
3698547..3699575 - 1026 15896740 - CAC3503 M COG0451 H 2 2 Nucleoside-diphosphate-sugar epimerase
3713056..3714222 - 1164 15896752 - CAC3515 E COG1506 + H 2 1 Alpha/beta superfamily hydrolase (possible peptidase)
3714551..3715603 - 1050 15896753 - CAC3516 T COG0642 + H 1 0 Membrane-associated histidine kinase with HAMP domain
3715608..3716300 - 690 15896754 - CAC3517 T COG0745 + H 1 1 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain)
3716587..3717174 - 585 15896755 - CAC3518 K COG1309 + H 1 2 Transcriptional regulators, AcrR family
3717860..3718804 - 942 15896757 - CAC3520 Q COG1131 + H 1 2 ABC-type transport system, ATPase component
3720849..3721340 - 489 15896760 - CAC3523 - - H 2 2 Hypothetical protein, CF-7 family
3725143..3725592 - 447 15896766 - CAC3529 - - H 1 2 Hypothetical protein
3802864..3803472 + 606 15896835 - CAC3601 L COG0494 H 1 1 Nudix (MutT) family hydrolase
3881508..3881852 - 342 15896911 kdpX CAC3679 - - H 2 2 Uncharacterized protein of kdp operon, kdpX
3908484..3910598 - 2112 15896935 - CAC3704 - COG0419 + H 2 0 Hypothetical protein, CF-7 family
3910595..3910867 - 270 15896936 - CAC3705 - - + H 1 2 +H 3.3 Hypothetical protein, CF-37 family(almost identical)
3911185..3911571 - 384 15896938 - CAC3707 - - + H 1 2 Uncharacterized protein, homolog of Bacillus firmus (gi:2654481)
3911568..3912026 - 456 15896939 - CAC3708 - - + H 2 2 +KP 3.2 4.6 Hypothetical protein
3912019..3916515 - 4494 15896940 - CAC3709 D COG1674 + H 2 0 DNA segregation ATPase, FtsK/SpoIIIE family, YUKA B.subtilis ortholog
3916525..3917640 - 1113 15896941 - CAC3710 - - + H 1 0 Uncharacterized protein, YUKC B.subtilis homolog
3917627..3917899 - 270 15896942 - CAC3711 - - + H 1 2 +Q 3.3 Hypothetical protein
3917883..3918425 - 540 15896943 - CAC3712 - - + H 2 2 Hypothetical protein
3918403..3918693 - 288 15896944 - CAC3713 - - + H 1 2 +Q 10.8 Uncharacterized conserved protein, yukE/yfjA B.subtilis family
3920086..3921414 - 1326 15896946 dnaC CAC3715 L COG0305 + H 1 0 Replicative DNA helicase, DNAC

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