Bacillus subtilis: 4112 proteins
See the statistical parameters
of all the genome.
See the correspondence analysis of relative synonymous codon
usages for Bacillus subtilis genes.
See the extraneous regions in terms of G+C content.
See the list of the proposed horizontally transferred genes.
Download the tab-delimited file with all the
statistical calculations for each gene. See the
Abbreviations used.
G+C content:
G+C(1) | G+C(2) | G+C(3) | G+C(T) | |
mean value | 51.9 | 35.5 | 44.0 | 43.8 |
st. dev. | 5.5 | 4.9 | 7.5 | 4.4 |
skewness | -0.5 | -0.1 | -0.7 | -1.2 |
kurtosis | 3.5 | 3.4 | 3.8 | 6.8 |
Amino acid content (in %):
AA | Mean value | SD | AA | Mean value | SD |
A | 7.5 | 2.6 | M | 2.8 | 1.2 |
C | 0.9 | 0.9 | N | 3.9 | 1.7 |
D | 5.2 | 2.0 | P | 3.6 | 1.5 |
E | 7.3 | 2.9 | Q | 3.8 | 1.7 |
F | 4.6 | 2.1 | R | 4.1 | 1.8 |
G | 6.8 | 2.3 | S | 6.2 | 2.0 |
H | 2.3 | 1.3 | T | 5.4 | 1.6 |
I | 7.4 | 2.3 | V | 6.8 | 2.0 |
K | 7.2 | 2.6 | W | 1.0 | 0.9 |
L | 9.8 | 2.7 | Y | 3.5 | 1.6 |
Codon usage (per thousand):
Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD | Codon | Mean | SD |
GCT (A) | 18.8 | 11.1 | CAT (H) | 15.5 | 10.0 | CCT (P) | 10.3 | 7.2 | AGT (S) | 6.7 | 6.3 |
GCC (A) | 15.5 | 10.0 | CAC (H) | 7.3 | 6.3 | CCC (P) | 3.5 | 4.3 | AGC (S) | 13.8 | 8.4 |
GCG (A) | 19.3 | 11.7 | ATT (I) | 37.4 | 15.3 | CCG (P) | 15.1 | 9.6 | ACT (T) | 8.9 | 7.8 |
GCA (A) | 21.3 | 11.0 | ATC (I) | 26.7 | 12.9 | CCA (P) | 6.9 | 6.1 | ACC (T) | 8.5 | 6.5 |
TGT (C) | 3.8 | 5.1 | ATA (I) | 10.0 | 9.4 | CAG (Q) | 18.2 | 11.3 | ACG (T) | 14.1 | 8.5 |
TGC (C) | 4.7 | 6.0 | AAG (K) | 21.2 | 11.5 | CAA (Q) | 19.7 | 11.1 | ACA (T) | 22.0 | 10.4 |
GAT (D) | 33.0 | 15.1 | AAA (K) | 50.2 | 20.4 | CGT (R) | 7.4 | 8.0 | GTT (V) | 19.4 | 11.0 |
GAC (D) | 18.3 | 10.4 | TTG (L) | 15.7 | 9.4 | CGC (R) | 8.1 | 7.1 | GTC (V) | 16.9 | 10.1 |
GAG (E) | 23.0 | 12.7 | TTA (L) | 20.0 | 12.3 | CGG (R) | 6.4 | 6.0 | GTG (V) | 17.8 | 9.7 |
GAA (E) | 49.5 | 22.1 | CTT (L) | 23.1 | 10.9 | CGA (R) | 4.1 | 4.4 | GTA (V) | 13.7 | 8.9 |
TTT (F) | 31.6 | 16.6 | CTC (L) | 10.8 | 7.6 | AGG (R) | 4.1 | 4.9 | TGG (W) | 10.3 | 8.7 |
TTC (F) | 13.8 | 9.7 | CTG (L) | 23.0 | 13.3 | AGA (R) | 11.0 | 8.0 | TAT (Y) | 22.9 | 12.3 |
GGT (G) | 12.5 | 9.0 | CTA (L) | 5.1 | 5.1 | TCT (S) | 12.7 | 8.1 | TAC (Y) | 11.9 | 7.8 |
GGC (G) | 22.6 | 12.8 | ATG (M) | 27.5 | 12.1 | TCC (S) | 7.8 | 6.1 | TGA (.) | 1.0 | 2.0 |
GGG (G) | 11.1 | 7.7 | AAT (N) | 22.4 | 12.7 | TCG (S) | 6.2 | 5.5 | TAG (.) | 0.6 | 1.7 |
GGA (G) | 21.4 | 10.7 | AAC (N) | 16.6 | 10.1 | TCA (S) | 14.6 | 8.5 | TAA (.) | 2.5 | 2.6 |
Relative Synonymous Codon Usage (RSCU):
RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD | RSCU | Mean | SD |
GCT (A) | 1.03 | 0.62 | CAT (H) | 1.28 | 0.58 | CCT (P) | 1.15 | 0.86 | AGT (S) | 0.66 | 0.67 |
GCC (A) | 0.80 | 0.54 | CAC (H) | 0.61 | 0.52 | CCC (P) | 0.38 | 0.57 | AGC (S) | 1.32 | 0.87 |
GCG (A) | 0.98 | 0.61 | ATT (I) | 1.51 | 0.49 | CCG (P) | 1.57 | 0.97 | ACT (T) | 0.69 | 0.64 |
GCA (A) | 1.16 | 0.62 | ATC (I) | 1.07 | 0.50 | CCA (P) | 0.79 | 0.80 | ACC (T) | 0.63 | 0.54 |
TGT (C) | 0.70 | 0.75 | ATA (I) | 0.42 | 0.39 | CAG (Q) | 0.91 | 0.46 | ACG (T) | 1.03 | 0.67 |
TGC (C) | 0.83 | 0.79 | AAG (K) | 0.59 | 0.29 | CAA (Q) | 1.05 | 0.47 | ACA (T) | 1.64 | 0.71 |
GAT (D) | 1.27 | 0.40 | AAA (K) | 1.41 | 0.29 | CGT (R) | 1.06 | 1.05 | GTT (V) | 1.15 | 0.63 |
GAC (D) | 0.71 | 0.38 | TTG (L) | 0.96 | 0.59 | CGC (R) | 1.14 | 1.04 | GTC (V) | 0.97 | 0.60 |
GAG (E) | 0.63 | 0.31 | TTA (L) | 1.26 | 0.78 | CGG (R) | 0.88 | 0.89 | GTG (V) | 1.04 | 0.60 |
GAA (E) | 1.36 | 0.33 | CTT (L) | 1.43 | 0.73 | CGA (R) | 0.61 | 0.77 | GTA (V) | 0.83 | 0.56 |
TTT (F) | 1.36 | 0.44 | CTC (L) | 0.64 | 0.50 | AGG (R) | 0.58 | 0.79 | TGG (W) | - | - |
TTC (F) | 0.61 | 0.42 | CTG (L) | 1.36 | 0.78 | AGA (R) | 1.65 | 1.24 | TAT (Y) | 1.28 | 0.46 |
GGT (G) | 0.75 | 0.57 | CTA (L) | 0.34 | 0.43 | TCT (S) | 1.25 | 0.87 | TAC (Y) | 0.68 | 0.44 |
GGC (G) | 1.28 | 0.70 | ATG (M) | - | - | TCC (S) | 0.74 | 0.64 | TGA (.) | - | - |
GGG (G) | 0.66 | 0.54 | AAT (N) | 1.13 | 0.45 | TCG (S) | 0.59 | 0.61 | TAG (.) | - | - |
GGA (G) | 1.28 | 0.66 | AAC (N) | 0.85 | 0.44 | TCA (S) | 1.42 | 0.85 | TAA (.) | - | - |