Horizontal Gene Transfer Database

Correspondence analysis of relative synonymous codon usage for Agrobacterium tumefaciens C58 (U. Wash.) circular chr. genes:




% variability
Axis 1
13.6
Axis 2
5.6
Axis 3
4.5
Axis 4
3.5
Axis 5
3.2
Axis 6
3.2
  Red (), blue () and green squares () correspond to genes proposed as being acquired by HGT and included in regions with a low, high and non-deviated G+C content, respectively. Yellow cross diagonals (x) correspond to putative highly expressed genes.
 

Correlation values between main axis in correspondence analysis and different parameters. See the Abbreviations used:
 

%G+C1
%G+C2
%G+C3
%G+CT
Nc
P2
X2
ICDI
Axis 1
-0.3
0.3
-0.8
-0.5
0.6
-0.5
-0.3
-0.4
Axis 2
0.2
0.1
0.3
0.3
-0.0
-0.3
-0.3
-0.3


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