Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Agrobacterium tumefaciens str. C58 (U. Washington) circular chromosome (See the Abbreviations used):
Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
34225..34689 - 462 17933957 - Atu0032 - - H 1 1 conserved hypothetical protein
51048..51533 + 483 17933974 - Atu0049 - - H 1 1 conserved hypothetical protein
59238..59627 - 387 17933978 - Atu0056 - - H 2 2 hypothetical protein
71188..71586 + 396 17933988 nrdI Atu0069 - - H 1 1 NrdI protein involved in ribonucleotide reduction
101514..102038 + 522 17934016 - Atu0097 - - H 1 2 conserved hypothetical protein
108895..109353 - 456 17934023 - Atu0104 - - H 1 1 conserved hypothetical protein
128715..129041 + 324 17934042 - Atu0124 - - H 2 2 hypothetical protein
229012..229524 - 510 17934140 ctpB Atu0223 - - H 2 2 components of type IV pilus, prepilin peptidase
229888..230142 - 252 17934142 - Atu0225 - - - H 2 2 +FG 3.0 -3.1 hypothetical protein
231037..231342 - 303 17934144 - Atu0228 - - - H 0 2 conserved hypothetical protein
231414..231929 + 513 17934145 - Atu0229 - - - H 0 0 conserved hypothetical protein
231933..232100 - 165 17934146 - Atu0230 - - - H 2 2 hypothetical protein
248654..249061 - 405 17934166 - Atu0250 - - H 1 1 conserved hypothetical protein
355746..356165 + 417 17934277 - Atu0361 - - H 1 1 transcriptional regulator
410191..410622 + 429 17934327 - Atu0412 - - H 1 2 hypothetical protein
429308..429535 - 225 17934347 - Atu0433 - - - H 2 2 hypothetical protein
430992..433148 + 2154 17934349 - Atu0436 - - - H 2 0 conserved hypothetical protein
433148..433828 + 678 17934350 - Atu0437 - - - H 2 2 conserved hypothetical protein
433830..434858 - 1026 17934351 intD Atu0438 - - - H 2 1 phage-related integrase
436490..436993 + 501 17934353 - Atu0440 - - - H 0 2 +S 4.4 hypothetical protein
437127..437636 + 507 17934354 - Atu0441 - - - H 1 2 +R 3.9 hypothetical protein
437753..438076 + 321 17934355 - Atu0442 - - - H 1 2 +S 5.7 hypothetical protein
439109..439417 + 306 17934357 - Atu0444 - - H 2 2 conserved hypothetical protein
454246..454614 - 366 17934371 - Atu0458 - - H 2 2 hypothetical protein
457153..457470 - 315 17934376 - Atu0463 - - - H 0 2 +S 3.4 hypothetical protein
457558..457881 + 321 17934377 - Atu0464 - - - H 1 2 hypothetical protein
457932..458390 - 456 17934378 - Atu0465 - - - H 2 2 +E 3.2 transcriptional regulator
458393..458752 - 357 17934379 - Atu0466 - - - H 2 2 hypothetical protein
458881..459027 - 144 17934380 - Atu0467 - - - H 1 2 +KTW 4.2 -3.2 3.0 hypothetical protein
459235..459648 + 411 17934381 - Atu0468 - - - H 2 2 +S 3.0 hypothetical protein
459730..460008 + 276 17934382 - Atu0469 - - - H 2 2 conserved hypothetical protein
460158..460418 + 258 17934383 - Atu0470 - - - H 2 2 +S 3.0 conserved hypothetical protein
461199..461756 + 555 17934385 - Atu0472 - - - H 2 0 +K 3.6 conserved hypothetical protein
461845..462759 - 912 17934386 - Atu0473 - - - H 0 0 +T 3.8 hypothetical protein
521537..521965 + 426 17934440 mscL Atu0528 - - H 2 1 large conductance mechanosensitive channel proteins
567435..567854 + 417 17934494 - Atu0583 - - H 1 1 hypothetical protein
634122..634616 + 492 17934555 - Atu0645 - - H 1 1 conserved hypothetical protein
718421..718882 + 459 17934628 - Atu0718 - - H 2 1 hypothetical protein
740263..740646 + 381 17934651 - Atu0741 - - H 2 2 conserved hypothetical protein
740689..741060 + 369 17934652 - Atu0742 - - H 1 2 conserved hypothetical protein
753120..753422 + 300 17934665 - Atu0755 - - H 2 2 conserved hypothetical protein
758572..758880 + 306 17934672 - Atu0762 - - H 1 2 hypothetical protein
857953..858303 + 348 17934767 - Atu0859 - - H 1 2 conserved hypothetical protein
877744..878196 + 450 17934791 - Atu0883 - - H 1 2 conserved hypothetical protein
889692..890093 + 399 17934806 - Atu0898 - - H 2 2 conserved hypothetical protein
904058..904444 + 384 17934822 mnhF Atu0914 - - H 1 2 Na+/H+ antiporter
943607..944773 + 1164 17934862 gp34 Atu0954 - - + H 1 0 phage head portal protein
944969..945289 + 318 17934863 - Atu0955 - - H 2 2 hypothetical protein
945339..945911 + 570 17934864 gp35 Atu0956 - - + H 1 0 +R 3.0 phage prohead protease
945944..947212 + 1266 17934865 gp36 Atu0957 - - + H 0 0 phage phi-C31 major capsid gp36-like protein
948215..948610 + 393 17934867 - Atu0959 - - + H 0 0 hypothetical protein
950881..951285 - 402 17934870 - Atu0962 - - + H 1 0 hypothetical protein
952262..952900 + 636 17934872 - Atu0964 - - + H 1 0 conserved hypothetical protein
953778..954212 + 432 17934874 - Atu0966 - - + H 2 0 conserved hypothetical protein
954230..958030 + 3798 17934875 - Atu0967 - - + H 2 0 conserved hypothetical protein
958759..959430 + 669 17934878 phoP Atu0970 - - + H 0 0 two component response regulator
959420..960820 + 1398 17934879 popQ Atu0971 - - + H 1 0 two component sensor kinase
987625..988494 - 867 17934900 - Atu0992 - - H 1 1 permease
1001117..1001506 - 387 17934912 - Atu1004 - - H 2 2 conserved hypothetical protein
1030123..1030500 + 375 17934945 - Atu1038 - - H 1 2 two component response regulator
1047915..1048352 - 435 17934963 - Atu1056 - - H 1 1 conserved hypothetical protein
1070618..1070929 - 309 17934985 - Atu1078 - - H 2 2 hypothetical protein
1128258..1128728 - 468 17935046 - Atu1139 - - H 2 2 conserved hypothetical protein
1137930..1138277 - 345 17935054 - Atu1147 - - H 1 2 conserved hypothetical protein
1178813..1179013 + 198 17935090 - Atu1184 - - - H 1 2 hypothetical protein
1179290..1179508 - 216 17935091 - Atu1185 - - - H 1 2 +C 5.2 hypothetical protein
1179559..1179849 + 288 17935092 - Atu1186 - - - H 1 2 +S 3.5 hypothetical protein
1179923..1181299 + 1374 17935093 - Atu1187 - - - H 0 0 tail fiber protein fragment [N-terminal]
1181410..1181742 + 330 17935094 - Atu1188 - - - H 2 2 hypothetical protein
1181751..1182014 + 261 17935095 - Atu1189 - - - H 2 2 hypothetical protein
1217560..1218204 - 642 17935130 exoD Atu1226 - - H 1 1 exoD protein
1219355..1220053 - 696 17935132 - Atu1228 - - H 2 2 hypothetical protein
1220592..1220981 + 387 17935134 - Atu1230 - - H 1 2 hypothetical protein
1286317..1286688 + 369 17935196 divK Atu1296 - - H 1 2 two component response regulator
1301320..1302138 + 816 17935209 - Atu1309 - - H 2 2 hypothetical protein
1306288..1306608 - 318 17935215 - Atu1315 - - H 1 2 hypothetical protein
1354401..1354748 - 345 17935261 - Atu1361 - - H 2 2 hypothetical protein
1357889..1358242 + 351 17935263 - Atu1363 - - H 2 2 conserved hypothetical protein
1456254..1456757 + 501 17935360 - Atu1460 - - H 1 2 conserved hypothetical protein
1524545..1524985 + 438 17935432 - Atu1533 - - H 1 2 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
1541499..1541819 - 318 17935450 - Atu1551 - - H 1 2 hypothetical protein
1542288..1542713 - 423 17935452 - Atu1553 - - H 2 2 conserved hypothetical protein
1552368..1552997 - 627 17935463 cysE Atu1565 - - H 2 2 serine acetyltransferase
1556967..1557284 - 315 17935468 - Atu1570 - - H 2 2 hypothetical protein
1624511..1624843 + 330 17935532 - Atu1637 - - H 2 2 hypothetical protein
1625551..1626006 - 453 17935533 - Atu1638 - - H 1 2 hypothetical protein
1652678..1653046 + 366 17935560 - Atu1666 - - H 2 2 hypothetical protein
1657895..1658236 - 339 17935565 - Atu1671 - - H 2 2 hypothetical protein
1703089..1703406 - 315 17935610 - Atu1716 - - H 2 2 hypothetical protein
1753744..1754082 + 336 17935662 glnB Atu1769 - - H 2 2 nitrogen regulatory protein PII
1756644..1756997 - 351 17935665 - Atu1772 - - H 1 2 hypothetical protein
1789852..1790217 - 363 17935698 - Atu1806 - - H 1 2 hypothetical protein
1792801..1793283 - 480 17935703 - Atu1813 - - H 1 2 conserved hypothetical protein
1850446..1850829 - 381 17935762 - Atu1872 - - H 2 2 conserved hypothetical protein
1865191..1865679 - 486 17935775 - Atu1885 - - H 1 2 transcriptional regulator, AsnC family
1890276..1890590 + 312 17935803 - Atu1913 - - H 1 2 hypothetical protein
1938518..1938697 + 177 17935857 - Atu1968 - - - H 2 2 +HNPV 3.5 3.0 3.1 -3.7 hypothetical protein
1939456..1939818 + 360 17935859 - Atu1970 - - - H 1 2 +HP 3.4 4.9 hypothetical protein
1939963..1940412 - 447 17935860 - Atu1971 - - - H 1 2 +K 4.6 conserved hypothetical protein
1940734..1941060 + 324 17935861 - Atu1972 - - - H 1 2 +A 3.3 conserved hypothetical protein
1941434..1942459 - 1023 17935863 cfa Atu1974 - - - H 0 0 cyclopropane-fatty-acyl-phospholipid synthase
1943289..1943423 + 132 17935865 - Atu1976 - - - H 2 2 +P 5.1 hypothetical protein
1943433..1944806 + 1371 17935866 - Atu1977 - - - H 0 0 amine oxidase, flavin-containing
1944803..1945621 + 816 17935867 - Atu1978 - - - H 0 0 conserved hypothetical protein
1945608..1946840 + 1230 17935868 - Atu1979 - - - H 0 0 cyclopropane-fatty-acyl-phospholipid synthase
1950222..1950659 - 435 17935874 - Atu1985 - - H 2 1 two component response regulator
1952320..1952694 + 372 17935876 exsF Atu1987 - - H 2 2 two component response regulator
1953754..1954209 - 453 17935878 - Atu1989 - - H 1 2 two component response regulator
2007495..2008205 - 708 17935935 - Atu2050 - - H 1 2 hypothetical protein
2034753..2035076 - 321 17935959 - Atu2074 - - H 2 2 hypothetical protein
2069642..2070043 + 399 17935989 - Atu2104 - - - H 1 2 conserved hypothetical protein
2070053..2070649 + 594 17935990 - Atu2105 - - - H 1 2 +N 3.3 hypothetical protein
2070651..2071196 + 543 17935991 gsp* Atu2106 - - - H 1 0 glutathionylspermidine synthetase (N-terminal)
2071191..2072729 - 1536 17935992 tnp Atu2107 - - - H 1 0 IS3 family transposase
2072822..2073418 + 594 17935993 gsp* Atu2108 - - - H 1 2 glutathionylspermidine synthetase (C-terminal)
2105797..2106219 - 420 17936025 - Atu2141 - - H 2 2 hypothetical protein
2130042..2130491 - 447 17936047 - Atu2164 - - H 1 1 conserved hypothetical protein
2141788..2143302 + 1512 17936054 - Atu2171 - - H 2 1 hydrolase
2220885..2221193 + 306 17936131 - Atu2248 - - H 1 2 hypothetical protein
2295190..2295786 - 594 17936200 - Atu2317 - - H 2 2 hypothetical protein
2301271..2301633 - 360 17936208 - Atu2325 - - H 2 2 conserved hypothetical protein
2347524..2347865 - 339 17936256 - Atu2374 - - H 2 2 hypothetical protein
2357922..2358359 + 435 17936269 - Atu2387 - - H 1 1 NTP pyrophosphohydrolase, MutT family
2393557..2394273 - 714 17936303 - Atu2421 - - H 2 1 chitooligosaccharide deacetylase
2428130..2428912 - 780 17936340 hmuV Atu2458 - - + H 1 0 ABC transporter, nucleotide binding/ATPase protein [hemin]
2428909..2429997 - 1086 17936341 hmuU Atu2459 - - + H 2 0 ABC transporter, membrane spanning protein [hemin]
2429994..2430887 - 891 17936342 hmuT Atu2460 - - + H 1 0 ABC transporter, substrate binding protein [hemin]
2431432..2431956 + 522 17936344 - Atu2462 - - + H 1 0 conserved hypothetical protein
2432183..2432959 + 774 17936345 - Atu2463 - - + H 2 0 +R 3.8 conserved hypothetical protein
2512788..2512997 - 207 17936420 - Atu2541 - - - H 2 2 +CT 3.8 4.7 hypothetical protein
2515653..2516042 + 387 17936421 - Atu2543 - - - H 2 2 hypothetical protein
2516278..2516493 + 213 17936422 - Atu2544 - - - H 1 2 +S 4.3 hypothetical protein
2519121..2520071 + 948 17936423 purC Atu2548 - - - H 0 0 phosphoribosylaminoimidazole-succinocarboxamide synthase
2520075..2520734 + 657 17936424 ameR Atu2549 - - - H 1 0 transcriptional regulator, TetR family
2578019..2578855 - 834 17936474 - Atu2599 - - H 1 2 hypothetical protein
2617617..2618093 - 474 17936509 - Atu2634 - - H 1 2 conserved hypothetical protein
2631576..2631953 + 375 17936521 - Atu2646 - - H 1 2 hypothetical protein
2683525..2683842 + 315 17936573 tyrA Atu2698 - - H 1 2 chorismate mutase
2700296..2700688 - 390 17936590 - Atu2715 - - H 1 2 conserved hypothetical protein
2737072..2737788 + 714 17936615 - Atu2740 - - H 1 2 transcriptional regulator, GntR family
2782276..2782764 - 486 17936652 - Atu2777 - - H 2 2 conserved hypothetical protein
2834264..2834881 - 615 17936705 gidB Atu2830 - - H 2 2 glucose inhibited division protein

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