Horizontal Gene Transfer Database

Correspondence analysis of relative synonymous codon usage for Agrobacterium tumefaciens C58 (Cereon) linear chr. genes:




% variability
Axis 1
14.5
Axis 2
5.4
Axis 3
4.4
Axis 4
3.5
Axis 5
3.2
Axis 6
3.1
  Red (), blue () and green squares () correspond to genes proposed as being acquired by HGT and included in regions with a low, high and non-deviated G+C content, respectively. Yellow cross diagonals (x) correspond to putative highly expressed genes.
 

Correlation values between main axis in correspondence analysis and different parameters. See the Abbreviations used:
 

%G+C1
%G+C2
%G+C3
%G+CT
Nc
P2
X2
ICDI
Axis 1
0.2
-0.1
0.9
0.6
-0.6
0.4
0.4
0.5
Axis 2
0.2
0.1
0.1
0.2
0.0
-0.2
-0.2
-0.1


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