Horizontal Gene Transfer Database

 

Proposed horizontally transferred genes for Agrobacterium tumefaciens str. C58 (Cereon) linear chromosome (See the Abbreviations used):


Coordinates  Strand Length PID Gene name Synonym FunctionCode COG GCRegion HGT SimGC SimMah Dev.AA Function
8..412 + 402 15890090 - AGR_L_1 - - H 1 2 AGR_L_1p
606..1208 + 600 15890091 - AGR_L_4 J COG1670 H 2 2 AGR_L_4p
3890..4600 - 708 15890094 - AGR_L_7 - - H 2 1 AGR_L_7p
9547..9708 + 159 15890100 - AGR_L_13 - - - H 1 2 +HQW 3.0 3.4 4.8 AGR_L_13p
9855..10112 - 255 15890101 - AGR_L_16 - - - H 2 2 +E 3.0 AGR_L_16p
10109..10306 - 195 15890102 - AGR_L_17 - - - H 2 2 +K 4.6 AGR_L_17p
10401..10592 - 189 15890103 - AGR_L_18 - - - H 2 2 +V -3.1 AGR_L_18p
11231..11452 + 219 15890105 - AGR_L_20 - - - H 0 2 +AF 4.2 5.0 AGR_L_20p
11893..12081 - 186 15890107 - AGR_L_22 - - - H 2 2 +CRV 3.1 3.5 -3.1 AGR_L_22p
12124..12291 + 165 15890108 - AGR_L_23 G COG2814 - H 1 2 +S 7.4 AGR_L_23p
12468..13430 - 960 15890109 - AGR_L_24 K COG2207 - H 1 0 AGR_L_24p
13408..13689 - 279 15890110 - AGR_L_25 - - - H 2 2 +CW 3.1 3.3 AGR_L_25p
13742..14206 + 462 15890111 - AGR_L_26 - - - H 2 2 AGR_L_26p
14426..14839 - 411 15890112 - AGR_L_27 - - - H 2 2 AGR_L_27p
14881..15630 - 747 15890113 - AGR_L_28 Q COG1028 - H 0 0 AGR_L_28p
16999..17613 - 612 15890115 - AGR_L_30 R COG3631 - H 1 2 AGR_L_30p
17806..18240 - 432 15890116 - AGR_L_31 - - - H 2 2 AGR_L_31p
18296..18868 + 570 15890117 - AGR_L_32 K COG1309 - H 2 1 AGR_L_32p
18995..19894 - 897 15890118 - AGR_L_33 K COG0583 - H 1 0 AGR_L_33p
19883..20074 + 189 15890119 - AGR_L_34 - - - H 2 2 +MS 3.4 6.0 AGR_L_34p
21066..21488 - 420 15890121 - AGR_L_36 K COG2207 - H 1 2 +P 3.8 AGR_L_36p
33593..34690 - 1095 15890134 - AGR_L_62 R COG1708 - H 2 0 AGR_L_62p
34701..34874 - 171 15890135 - AGR_L_63 - - - H 2 2 AGR_L_63p
38978..39181 - 201 15890137 - AGR_L_67 - - - H 1 2 +RY 5.0 3.2 AGR_L_67p
39694..40386 + 690 15890138 - AGR_L_69 - - - H 1 1 AGR_L_69p
40554..41096 + 540 15890139 - AGR_L_70 - - - H 2 2 +F 4.3 AGR_L_70p
56154..56711 - 555 15890155 - AGR_L_94 - - H 1 1 AGR_L_94p
102891..103748 + 855 15890196 - AGR_L_173 K COG2771 - H 0 0 AGR_L_173p
107452..107748 + 294 15890199 - AGR_L_178 - - - H 0 2 +Q 4.6 AGR_L_178p
108258..108437 + 177 15890200 - AGR_L_180 - - - H 1 2 +CP 3.3 7.8 AGR_L_180p
309070..309639 + 567 15890372 - AGR_L_529 M COG1898 - H 1 2 AGR_L_529p
309639..310697 + 1056 15890373 - AGR_L_530 M COG1088 - H 1 0 AGR_L_530p
310702..311595 + 891 15890374 - AGR_L_531 M COG1091 - H 1 0 AGR_L_531p
311532..312458 + 924 15890375 - AGR_L_532 M COG1209 - H 1 0 AGR_L_532p
312545..313426 + 879 15890376 - AGR_L_533 R COG1216 - H 2 0 AGR_L_533p
313581..315944 + 2361 15890377 - AGR_L_534gl M COG0463 - H 2 0 AGR_L_534glp
316761..317837 + 1074 15890378 - AGR_L_537 M COG0451 H 2 2 AGR_L_537p
317892..318812 + 918 15890379 - AGR_L_538 R COG1216 - H 2 0 AGR_L_538p
318812..320665 + 1851 15890380 - AGR_L_540 M COG0463 - H 2 0 AGR_L_540p
320665..321783 + 1116 15890381 - AGR_L_540gl I COG1835 - H 2 2 AGR_L_540glp
322058..323704 + 1644 15890382 - AGR_L_543 M COG3754 - H 2 1 AGR_L_543p
338208..338528 - 318 15890399 - AGR_L_570 R COG0385 H 1 2 AGR_L_570p
398387..398689 - 300 15890458 - AGR_L_680 S COG1359 H 1 2 AGR_L_680p
535524..536333 - 807 15890580 - AGR_L_927 P COG0600 + H 2 0 +W 3.5 AGR_L_927p
536339..537322 - 981 15890581 - AGR_L_928 P COG0715 + H 0 0 AGR_L_928p
539592..539969 - 375 15890583 - AGR_L_933 - COG0807 + H 1 1 AGR_L_933p
539966..540913 - 945 15890584 - AGR_L_934 O COG0826 + H 1 0 AGR_L_934p
540910..541887 - 975 15890585 - AGR_L_935 O COG0826 + H 0 0 AGR_L_935p
542902..544476 + 1572 15890588 - AGR_L_941 H COG0043 + H 0 0 AGR_L_941p
588325..588999 - 672 15890632 - AGR_L_1029 - - H 2 1 AGR_L_1029p
589027..589863 - 834 15890633 - AGR_L_1030 - - H 2 2 AGR_L_1030p
677115..677513 - 396 15890710 - AGR_L_1181 - - H 2 2 AGR_L_1181p
693888..694418 - 528 15890727 - AGR_L_1212gl J COG1670 H 2 1 AGR_L_1212glp
738054..738479 + 423 15890769 - AGR_L_1290 - - H 1 2 AGR_L_1290p
764765..765064 - 297 15890795 - AGR_L_1341 - - - H 2 2 +T 3.0 AGR_L_1341p
767506..768039 + 531 15890796 - AGR_L_1343 - - - H 2 2 +F 3.7 AGR_L_1343p
768036..768422 + 384 15890797 - AGR_L_1344 - - - H 2 2 +HQS 3.5 6.5 5.8 AGR_L_1344p
887143..887697 - 552 15890902 - AGR_L_1572 - - H 1 1 AGR_L_1572p
976695..977135 - 438 15890986 - AGR_L_1741 S COG2259 H 1 2 AGR_L_1741p
1042347..1042919 + 570 15891034 - AGR_L_1834 S COG3758 H 1 1 AGR_L_1834p
1096283..1096648 + 363 15891080 - AGR_L_1929 T COG0784 H 1 1 AGR_L_1929p
1133135..1133554 - 417 15891107 - AGR_L_1982 - - - H 2 2 AGR_L_1982p
1134096..1134383 - 285 15891108 - AGR_L_1984 - - - H 0 2 +CP 5.7 3.6 AGR_L_1984p
1135621..1136133 - 510 15891110 - AGR_L_1990 - - - H 2 2 AGR_L_1990p
1136185..1137267 - 1080 15891111 - AGR_L_1991 - - - H 2 0 AGR_L_1991p
1137670..1138260 + 588 15891112 - AGR_L_1993 - - - H 2 1 +N 3.2 AGR_L_1993p
1139089..1140474 - 1383 15891113 - AGR_L_1997 L COG2189 - H 2 0 AGR_L_1997p
1140452..1140778 - 324 15891114 - AGR_L_1998 L COG2189 - H 2 2 AGR_L_1998p
1141556..1141783 + 225 15891115 - AGR_L_2000 - - - H 1 2 +CSY 7.6 6.0 3.8 AGR_L_2000p
1141780..1142406 + 624 15891116 - AGR_L_2001 - - - H 2 2 AGR_L_2001p
1142697..1143482 + 783 15891117 - AGR_L_2002 - - - H 2 2 AGR_L_2002p
1143469..1144164 + 693 15891118 - AGR_L_2003 - - - H 2 2 AGR_L_2003p
1144177..1144716 + 537 15891119 - AGR_L_2004 - - - H 2 2 AGR_L_2004p
1144880..1146421 - 1539 15891120 - AGR_L_2005 - - - H 2 0 AGR_L_2005p
1146629..1147819 - 1188 15891121 - AGR_L_2007 L COG0582 - H 1 0 AGR_L_2007p
1150404..1150982 - 576 15891124 - AGR_L_2013 K COG0454 - H 1 2 AGR_L_2013p
1215913..1216278 + 363 15891175 - AGR_L_2122 T COG2202 H 2 2 AGR_L_2122p
1362085..1362567 + 480 15891282 - AGR_L_2343 K COG1959 H 1 2 AGR_L_2343p
1362794..1364404 - 1608 15891283 - AGR_L_2345 - - - H 2 0 AGR_L_2345p
1364956..1365678 + 720 15891284 - AGR_L_2348 - - - H 1 2 AGR_L_2348p
1366550..1366735 + 183 15891285 - AGR_L_2351 - - - H 2 2 +NSV 4.1 -3.6 3.9 AGR_L_2351p
1367535..1367783 - 246 15891286 - AGR_L_2354 G COG0662 - H 2 2 +S -3.6 AGR_L_2354p
1368052..1368438 - 384 15891287 - AGR_L_2355 K COG0454 - H 1 2 AGR_L_2355p
1368619..1369191 - 570 15891288 - AGR_L_2357 O COG1225 - H 2 2 AGR_L_2357p
1369363..1370037 + 672 15891289 - AGR_L_2359 - - - H 2 1 AGR_L_2359p
1370875..1371765 - 888 15891290 - AGR_L_2362 R COG1073 - H 1 0 AGR_L_2362p
1371855..1372721 - 864 15891291 - AGR_L_2363 Q COG0412 - H 1 0 AGR_L_2363p
1372792..1373439 - 645 15891292 - AGR_L_2364 J COG1670 - H 1 2 AGR_L_2364p
1373499..1373690 + 189 15891293 - AGR_L_2365 - - - H 2 2 +C 5.1 AGR_L_2365p
1373850..1374137 - 285 15891294 - AGR_L_2367 S COG3575 - H 2 2 AGR_L_2367p
1374863..1375288 + 423 15891295 - AGR_L_2368 - - - H 1 2 AGR_L_2368p
1375818..1376117 - 297 15891296 - AGR_L_2370 - - - H 2 2 +QY 3.0 5.1 AGR_L_2370p
1376494..1377429 - 933 15891297 - AGR_L_2371 - - - H 0 0 AGR_L_2371p
1380943..1382523 + 1578 15891300 - AGR_L_2376 - - - H 2 0 AGR_L_2376p
1382520..1383257 + 735 15891301 - AGR_L_2377 - - - H 2 2 AGR_L_2377p
1383261..1384385 + 1122 15891302 - AGR_L_2378 - - - H 2 0 AGR_L_2378p
1403046..1403819 + 771 15891323 - AGR_L_2419 - - H 1 1 AGR_L_2419p
1403928..1404368 - 438 15891324 - AGR_L_2421 S COG3542 H 1 2 AGR_L_2421p
1454443..1454865 + 420 15891375 - AGR_L_2525 - - H 2 2 AGR_L_2525p
1469106..1469675 - 567 15891388 - AGR_L_2557 I COG1835 H 1 1 AGR_L_2557p
1526345..1526851 + 504 15891441 - AGR_L_2662 S COG3915 H 2 1 AGR_L_2662p
1871482..1871883 + 399 15891736 - AGR_L_3233 K COG1846 H 1 1 AGR_L_3233p
1875183..1875926 + 741 15891740 - AGR_L_3243 Q COG0500 H 2 1 AGR_L_3243p
1942963..1943334 - 369 15891805 - AGR_L_3375 - - H 1 2 AGR_L_3375p
2063132..2063617 - 483 15891908 - AGR_L_3571 - - H 1 2 AGR_L_3571p
2063586..2063879 - 291 15891909 - AGR_L_3572 G COG0406 - H 2 2 AGR_L_3572p
2065160..2065423 + 261 15891912 - AGR_L_3576 K COG2002 - H 1 2 +T 3.9 AGR_L_3576p
2065420..2065824 + 402 15891913 - AGR_L_3577 R COG1487 - H 2 2 AGR_L_3577p
2066105..2066671 + 564 15891914 - AGR_L_3579 - - - H 1 2 AGR_L_3579p
2068187..2069254 - 1065 15891917 - AGR_L_3583 I COG1835 - H 2 2 +FI 3.2 3.4 AGR_L_3583p
2069679..2069933 + 252 15891918 - AGR_L_3585 - - - H 2 2 AGR_L_3585p
2069953..2071371 + 1416 15891919 - AGR_L_3586 - COG3037 - H 2 2 +F 3.8 AGR_L_3586p
2071778..2071993 - 213 15891920 - AGR_L_3588 - - - H 2 2 AGR_L_3588p
2072381..2072764 + 381 15891921 - AGR_L_3590 L COG3293 - H 1 2 +CH 5.0 3.6 AGR_L_3590p

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