Database for Use with BLAST



Databases Database Sequences Used with Program Comments
NR Nucleotide or protein BLASTN BLASTP BLASTX The non-redundant dataset contains nucleic or protein sequences from all known data sources.
MONTH Nucleotide or protein BLASTN BLASTP BLASTX A 'rolling-month' dataset which represents the new records introduced to the database in the last month. Very useful for periodical verification of the databases.
SWISSPROT Protein BLASTP BLASTX The Swiss-Prot protein databases.
DBEST Nucleotide BLASTN TBLASTN TBLASTX The database of Expressed Sequence Tags.
DBSTS Nucleotide BLASTN TBLASTN TBLASTX The database of Sequenced Tag Sites.
PDB Protein BLASTP BLASTX The Brookhaven Protein database
VECTOR Nucleotide BLASTN A databse of vector sequences: a useful check to do before database submissions.
KABAT Protein BLASTP BLASTX Proteins of Immunological Interest.
MITO Nucleotide BLASTN A database of mitochondrial DNA sequences, also a useful check to do before database submissions.
ALU Nucleotide BLASTN A database of repetitive DNA sequences, also a useful check to do before database submissions. (mostly mamalian sequences)
EPD Nucleotide BLASTN Eukaroytic Promoter Database


 Introducció

Tema 2

 Tema 3

Tema 4

Tema5i6

 Tema 7

  Presentació

 Buscadors

  Truks :)

  Aprofitant...
 Gracies a  Software